GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
GCP - YEAZ
UniProt: P05852 - P76256
Length: 568
Sequences: 457
Seq/Len: 0.82
I_Prob: 0.08

GCP - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: GCP
YEAZ - Uncharacterized protein YeaZ
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YEAZ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3zeuBE:AD:AD:BEContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
52_V 219_R 1.71 0.08
100_F 43_Q 1.62 0.07
8_T 46_L 1.49 0.05
59_I 80_G 1.45 0.04
120_M 68_F 1.45 0.04
299_T 143_V 1.33 0.03
14_G 121_E 1.29 0.03
321_L 43_Q 1.28 0.03
269_V 66_G 1.25 0.02
245_D 127_Y 1.23 0.02
97_S 39_L 1.21 0.02
121_L 9_A 1.21 0.02
54_K 194_M 1.18 0.02
195_F 219_R 1.10 0.01
240_E 66_G 1.09 0.01
15_I 178_G 1.09 0.01
46_L 149_V 1.09 0.01
93_T 77_I 1.08 0.01
56_V 68_F 1.08 0.01
31_S 219_R 1.08 0.01
100_F 39_L 1.08 0.01
195_F 3_I 1.07 0.01
127_E 86_E 1.07 0.01
169_T 81_L 1.07 0.01
94_V 80_G 1.06 0.01
60_Q 83_L 1.05 0.01
46_L 197_I 1.04 0.01
65_E 114_A 1.04 0.01
97_S 81_L 1.02 0.01
234_D 55_D 1.01 0.01
270_S 40_P 1.01 0.01
235_I 195_L 1.01 0.01
38_D 118_R 1.01 0.01
112_M 66_G 1.01 0.01
31_S 74_G 0.99 0.01
19_D 59_L 0.99 0.01
53_R 118_R 0.98 0.01
249_I 111_V 0.98 0.01
233_A 8_T 0.97 0.01
296_E 77_I 0.97 0.01
222_I 97_T 0.97 0.01
309_G 97_T 0.97 0.01
99_A 114_A 0.95 0.01
197_F 121_E 0.94 0.01
72_D 53_L 0.94 0.01
325_V 16_A 0.94 0.01
314_K 56_I 0.94 0.01
93_T 149_V 0.94 0.01
140_T 76_G 0.93 0.01
261_K 81_L 0.93 0.01
306_A 207_T 0.93 0.01
260_F 122_V 0.93 0.01
290_V 45_I 0.93 0.01
297_F 56_I 0.93 0.01
176_D 82_A 0.92 0.01
283_M 97_T 0.92 0.01
46_L 84_G 0.92 0.01
60_Q 173_L 0.92 0.01
18_Y 43_Q 0.92 0.01
221_T 68_F 0.91 0.01
26_A 21_G 0.91 0.01
183_L 43_Q 0.91 0.01
9_S 66_G 0.90 0.01
99_A 194_M 0.90 0.01
17_I 196_P 0.90 0.01
80_A 76_G 0.90 0.01
87_A 123_Y 0.90 0.01
89_L 66_G 0.90 0.01
46_L 112_L 0.90 0.01
126_P 32_R 0.90 0.01
295_P 53_L 0.89 0.01
101_A 81_L 0.89 0.01
27_N 39_L 0.89 0.01
42_V 66_G 0.89 0.01
309_G 115_I 0.89 0.01
285_K 56_I 0.89 0.01
79_T 66_G 0.89 0.01
197_F 71_V 0.89 0.01
299_T 121_E 0.88 0.01
250_K 8_T 0.88 0.01
271_A 8_T 0.87 0.01
15_I 91_G 0.87 0.01
34_K 81_L 0.87 0.01
183_L 54_T 0.87 0.01
313_F 73_I 0.87 0.01
89_L 35_T 0.87 0.01
162_A 195_L 0.87 0.01
172_L 220_N 0.86 0.01
217_F 91_G 0.86 0.01
309_G 209_A 0.85 0.01
230_Q 149_V 0.85 0.01
103_D 43_Q 0.85 0.01
28_Q 134_I 0.85 0.01
274_T 68_F 0.85 0.01
67_G 151_E 0.85 0.01
333_E 8_T 0.85 0.01
185_K 169_A 0.85 0.01
8_T 42_V 0.85 0.01
252_K 17_L 0.85 0.01
22_K 170_W 0.85 0.01
32_Q 67_S 0.85 0.01
104_V 3_I 0.84 0.01
287_R 62_G 0.84 0.01
89_L 10_T 0.84 0.01
239_F 34_H 0.84 0.01
222_I 54_T 0.84 0.01
288_G 46_L 0.84 0.01
306_A 37_R 0.84 0.01
116_L 14_S 0.84 0.01
100_F 46_L 0.83 0.01
170_A 190_A 0.83 0.01
103_D 54_T 0.83 0.01
306_A 135_W 0.83 0.01
120_M 94_T 0.83 0.01
43_V 66_G 0.83 0.01
55_T 76_G 0.82 0.01
319_A 17_L 0.82 0.01
73_I 114_A 0.82 0.01
182_L 8_T 0.82 0.01
65_E 172_D 0.82 0.01
29_L 99_A 0.82 0.01
68_L 155_Q 0.81 0.01
324_S 39_L 0.81 0.01
282_M 89_M 0.81 0.01
72_D 128_Q 0.81 0.01
263_L 218_L 0.81 0.01
113_E 68_F 0.81 0.01
124_N 38_I 0.80 0.01
273_R 55_D 0.80 0.01
92_A 12_A 0.79 0.01
238_A 194_M 0.79 0.01
190_G 71_V 0.79 0.01
145_V 14_S 0.79 0.01
188_A 20_D 0.79 0.01
217_F 198_A 0.79 0.01
284_K 136_H 0.79 0.01
56_V 83_L 0.79 0.01
48_S 70_G 0.79 0.00
108_P 89_M 0.78 0.00
237_R 71_V 0.78 0.00
251_C 128_Q 0.78 0.00
140_T 42_V 0.78 0.00
327_P 23_V 0.78 0.00
191_T 17_L 0.78 0.00
37_A 19_N 0.78 0.00
166_F 68_F 0.77 0.00
119_P 35_T 0.77 0.00
158_I 191_A 0.77 0.00
124_N 32_R 0.77 0.00
145_V 76_G 0.77 0.00
217_F 46_L 0.77 0.00
199_R 56_I 0.77 0.00
236_A 99_A 0.77 0.00
112_M 119_M 0.76 0.00
323_V 43_Q 0.76 0.00
63_L 163_V 0.76 0.00
322_G 23_V 0.76 0.00
18_Y 119_M 0.76 0.00
117_L 68_F 0.76 0.00
127_E 44_D 0.76 0.00
262_R 68_F 0.76 0.00
121_L 99_A 0.76 0.00
244_V 6_I 0.76 0.00
31_S 123_Y 0.76 0.00
152_E 87_L 0.76 0.00
290_V 208_V 0.76 0.00
302_G 94_T 0.76 0.00
85_V 73_I 0.76 0.00
141_Q 80_G 0.76 0.00
311_V 68_F 0.76 0.00
149_G 119_M 0.76 0.00
143_I 71_V 0.76 0.00
77_A 135_W 0.76 0.00
270_S 66_G 0.75 0.00
246_T 118_R 0.75 0.00
320_D 125_A 0.75 0.00
258_T 46_L 0.75 0.00
245_D 42_V 0.75 0.00
325_V 165_T 0.75 0.00
132_A 168_Q 0.75 0.00
70_A 84_G 0.75 0.00
265_M 37_R 0.75 0.00
254_A 58_A 0.75 0.00
16_A 140_T 0.75 0.00
58_L 190_A 0.74 0.00
122_E 68_F 0.74 0.00
303_A 44_D 0.74 0.00
33_V 167_W 0.74 0.00
297_F 82_A 0.74 0.00
110_H 71_V 0.74 0.00
6_I 151_E 0.74 0.00
69_T 171_P 0.74 0.00
16_A 151_E 0.74 0.00
6_I 57_N 0.74 0.00
265_M 43_Q 0.74 0.00
39_Y 113_A 0.74 0.00
74_D 192_E 0.74 0.00
216_T 150_H 0.74 0.00
293_A 119_M 0.74 0.00
130_F 219_R 0.74 0.00
204_R 42_V 0.73 0.00
100_F 53_L 0.73 0.00
261_K 56_I 0.73 0.00
46_L 196_P 0.73 0.00
124_N 159_E 0.73 0.00
207_L 18_W 0.73 0.00
102_W 89_M 0.73 0.00
172_L 98_M 0.73 0.00
143_I 62_G 0.73 0.00
206_G 94_T 0.73 0.00
78_Y 16_A 0.73 0.00
237_R 77_I 0.73 0.00
222_I 88_P 0.72 0.00
217_F 133_G 0.72 0.00
192_A 112_L 0.72 0.00
89_L 34_H 0.72 0.00
309_G 170_W 0.72 0.00
37_A 119_M 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0336 seconds.