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ATPE - RHO
UniProt: P0A6E6 - P0AG30
Length: 558
Sequences: 271
Seq/Len: 0.61
I_Prob: 0.06

ATPE - ATP synthase epsilon chain
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPE
RHO - Transcription termination factor Rho
Paralog alert: 0.19 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RHO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2ck3DEF:ABC:HContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
28_G 240_V 1.80 0.06
71_E 364_G 1.36 0.02
7_L 346_S 1.34 0.02
114_D 207_L 1.32 0.02
7_L 67_S 1.22 0.01
77_V 170_R 1.21 0.01
65_L 243_A 1.20 0.01
27_T 62_F 1.13 0.01
114_D 60_D 1.13 0.01
83_T 105_K 1.12 0.01
38_G 348_K 1.12 0.01
79_V 97_I 1.09 0.01
124_K 226_E 1.09 0.01
12_A 244_E 1.07 0.01
127_A 202_C 1.06 0.01
43_L 108_E 1.05 0.01
72_V 219_M 1.05 0.01
71_E 227_V 1.05 0.01
84_A 351_E 1.04 0.01
45_A 319_A 1.03 0.01
11_S 389_P 1.03 0.01
131_V 195_I 1.01 0.01
87_G 55_L 0.99 0.01
61_E 313_L 0.98 0.01
51_I 136_L 0.98 0.01
27_T 162_L 0.98 0.01
72_V 200_P 0.98 0.01
107_S 174_G 0.98 0.01
52_R 364_G 0.98 0.01
69_I 79_I 0.98 0.01
67_G 389_P 0.98 0.01
74_P 162_L 0.97 0.01
129_L 147_M 0.96 0.01
116_A 313_L 0.96 0.01
82_D 108_E 0.95 0.01
122_L 93_T 0.93 0.00
126_I 374_Q 0.92 0.00
65_L 98_S 0.91 0.00
118_A 204_L 0.91 0.00
115_Y 352_K 0.90 0.00
36_Y 99_G 0.89 0.00
131_V 116_V 0.89 0.00
127_A 346_S 0.89 0.00
129_L 378_Q 0.88 0.00
81_A 55_L 0.87 0.00
34_G 371_L 0.87 0.00
89_D 226_E 0.87 0.00
74_P 313_L 0.87 0.00
14_Q 193_Q 0.87 0.00
82_D 258_K 0.87 0.00
77_V 79_I 0.86 0.00
81_A 227_V 0.86 0.00
37_P 58_L 0.86 0.00
84_A 235_P 0.86 0.00
119_S 60_D 0.86 0.00
12_A 81_V 0.85 0.00
12_A 213_P 0.85 0.00
10_V 207_L 0.84 0.00
77_V 144_R 0.84 0.00
80_L 58_L 0.84 0.00
53_I 386_I 0.84 0.00
21_V 259_D 0.84 0.00
72_V 385_K 0.84 0.00
19_G 137_T 0.84 0.00
51_I 193_Q 0.84 0.00
40_A 140_H 0.84 0.00
41_P 54_V 0.83 0.00
40_A 224_K 0.83 0.00
7_L 349_I 0.83 0.00
19_G 207_L 0.83 0.00
48_P 337_G 0.83 0.00
25_Q 294_L 0.83 0.00
107_S 204_L 0.83 0.00
42_L 366_R 0.83 0.00
11_S 94_G 0.83 0.00
79_V 127_A 0.82 0.00
15_Q 108_E 0.82 0.00
13_E 355_F 0.82 0.00
89_D 193_Q 0.82 0.00
58_G 371_L 0.82 0.00
84_A 226_E 0.81 0.00
10_V 99_G 0.81 0.00
72_V 350_A 0.81 0.00
40_A 197_Y 0.81 0.00
36_Y 124_P 0.80 0.00
22_E 364_G 0.80 0.00
104_E 187_L 0.80 0.00
11_S 81_V 0.80 0.00
127_A 271_A 0.80 0.00
36_Y 294_L 0.80 0.00
14_Q 63_G 0.80 0.00
10_V 193_Q 0.80 0.00
114_D 204_L 0.80 0.00
107_S 54_V 0.80 0.00
5_Y 67_S 0.79 0.00
5_Y 349_I 0.79 0.00
48_P 79_I 0.79 0.00
27_T 165_A 0.79 0.00
25_Q 362_R 0.79 0.00
21_V 337_G 0.79 0.00
11_S 244_E 0.79 0.00
49_G 284_V 0.79 0.00
105_H 103_P 0.79 0.00
72_V 366_R 0.79 0.00
70_L 58_L 0.79 0.00
37_P 198_N 0.78 0.00
8_D 364_G 0.78 0.00
121_E 174_G 0.78 0.00
21_V 123_K 0.77 0.00
82_D 119_V 0.77 0.00
19_G 165_A 0.77 0.00
83_T 60_D 0.77 0.00
81_A 155_E 0.77 0.00
83_T 381_W 0.77 0.00
4_T 371_L 0.77 0.00
28_G 258_K 0.77 0.00
114_D 319_A 0.77 0.00
5_Y 143_S 0.77 0.00
47_K 189_Q 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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