GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
CDSA - LPXD
UniProt: P0ABG1 - P21645
Length: 626
Sequences: 401
Seq/Len: 0.66
I_Prob: 0.03

CDSA - Phosphatidate cytidylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CDSA YNBB
LPXD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
Paralog alert: 0.09 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: LPXD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_V 142_V 1.72 0.03
92_S 156_A 1.37 0.01
136_L 28_V 1.30 0.01
198_A 100_I 1.26 0.01
228_A 82_T 1.24 0.01
251_G 73_A 1.16 0.01
274_F 302_S 1.14 0.01
94_G 108_A 1.14 0.01
113_W 161_Y 1.14 0.01
253_L 255_M 1.13 0.01
221_L 243_I 1.09 0.01
134_G 83_Y 1.08 0.01
134_G 273_I 1.08 0.01
272_P 204_G 1.05 0.01
2_L 228_G 1.05 0.01
181_A 231_I 1.05 0.01
251_G 64_D 1.05 0.01
66_L 83_Y 1.04 0.01
168_A 310_N 1.04 0.01
58_L 268_G 1.04 0.01
74_P 205_D 1.03 0.01
269_A 314_R 1.03 0.01
251_G 90_L 1.03 0.01
205_W 118_I 1.03 0.01
189_T 90_L 1.03 0.01
14_P 234_Q 1.02 0.00
226_V 166_I 1.02 0.00
104_L 205_D 1.02 0.00
96_W 192_W 1.02 0.00
113_W 174_S 1.01 0.00
124_G 47_Y 1.01 0.00
275_A 279_I 0.99 0.00
158_M 234_Q 0.99 0.00
163_G 118_I 0.98 0.00
210_W 61_M 0.98 0.00
50_T 85_R 0.98 0.00
34_V 120_A 0.97 0.00
110_A 238_A 0.97 0.00
241_F 287_G 0.95 0.00
224_S 234_Q 0.95 0.00
183_K 235_C 0.95 0.00
128_I 227_N 0.94 0.00
139_R 231_I 0.94 0.00
177_K 102_P 0.94 0.00
184_V 6_L 0.93 0.00
260_I 212_C 0.93 0.00
17_I 139_G 0.93 0.00
246_G 46_K 0.93 0.00
24_P 135_I 0.91 0.00
266_S 245_D 0.91 0.00
198_A 55_Q 0.91 0.00
191_Q 83_Y 0.91 0.00
187_G 78_N 0.91 0.00
17_I 58_A 0.91 0.00
221_L 102_P 0.90 0.00
199_T 76_V 0.90 0.00
264_I 298_P 0.90 0.00
167_G 230_I 0.90 0.00
151_A 39_I 0.90 0.00
276_C 320_V 0.90 0.00
30_I 17_L 0.89 0.00
251_G 106_I 0.89 0.00
135_M 255_M 0.89 0.00
272_P 301_Y 0.89 0.00
6_L 221_D 0.89 0.00
266_S 327_S 0.89 0.00
126_L 261_I 0.88 0.00
9_A 41_F 0.88 0.00
276_C 278_E 0.88 0.00
101_L 148_I 0.88 0.00
222_I 77_K 0.87 0.00
152_I 30_S 0.87 0.00
197_L 176_T 0.87 0.00
203_I 214_T 0.87 0.00
222_I 8_D 0.87 0.00
155_L 318_A 0.87 0.00
246_G 25_I 0.86 0.00
6_L 335_R 0.86 0.00
11_V 32_Q 0.86 0.00
155_L 160_I 0.86 0.00
154_L 172_I 0.86 0.00
46_L 228_G 0.85 0.00
276_C 8_D 0.85 0.00
21_F 13_L 0.85 0.00
177_K 286_T 0.85 0.00
197_L 94_P 0.85 0.00
125_V 205_D 0.85 0.00
177_K 298_P 0.85 0.00
31_V 109_T 0.85 0.00
74_P 39_I 0.85 0.00
271_V 83_Y 0.85 0.00
13_I 286_T 0.85 0.00
200_A 306_P 0.85 0.00
73_L 166_I 0.85 0.00
196_G 322_N 0.85 0.00
237_T 173_Q 0.84 0.00
67_A 130_L 0.84 0.00
167_G 38_H 0.84 0.00
271_V 25_I 0.84 0.00
272_P 229_V 0.84 0.00
184_V 303_S 0.84 0.00
96_W 265_C 0.84 0.00
22_L 24_V 0.84 0.00
132_F 320_V 0.84 0.00
173_K 174_S 0.84 0.00
224_S 81_L 0.84 0.00
267_L 119_G 0.83 0.00
227_A 8_D 0.83 0.00
160_L 287_G 0.83 0.00
21_F 136_I 0.83 0.00
210_W 160_I 0.83 0.00
238_E 197_Q 0.83 0.00
251_G 30_S 0.82 0.00
241_F 203_I 0.82 0.00
46_L 46_K 0.82 0.00
121_L 89_I 0.82 0.00
16_V 331_K 0.82 0.00
173_K 134_V 0.82 0.00
178_H 61_M 0.82 0.00
6_L 198_I 0.82 0.00
101_L 211_A 0.82 0.00
159_I 282_K 0.82 0.00
228_A 65_D 0.82 0.00
67_A 37_G 0.82 0.00
173_K 248_A 0.81 0.00
34_V 1_M 0.81 0.00
189_T 211_A 0.81 0.00
71_F 106_I 0.81 0.00
91_A 129_E 0.81 0.00
6_L 295_I 0.81 0.00
24_P 142_V 0.81 0.00
95_W 314_R 0.81 0.00
139_R 241_V 0.81 0.00
154_L 259_L 0.81 0.00
247_I 174_S 0.81 0.00
36_C 28_V 0.81 0.00
272_P 192_W 0.81 0.00
7_I 185_Y 0.81 0.00
14_P 42_M 0.81 0.00
8_S 42_M 0.80 0.00
135_M 321_M 0.80 0.00
14_P 187_N 0.80 0.00
95_W 9_L 0.80 0.00
2_L 6_L 0.80 0.00
207_Y 61_M 0.80 0.00
173_K 122_A 0.80 0.00
117_K 46_K 0.80 0.00
167_G 303_S 0.80 0.00
31_V 293_R 0.80 0.00
170_M 14_D 0.80 0.00
15_V 45_P 0.80 0.00
230_A 141_F 0.80 0.00
184_V 60_V 0.80 0.00
226_V 25_I 0.79 0.00
189_T 273_I 0.79 0.00
94_G 225_I 0.79 0.00
157_V 274_N 0.79 0.00
60_V 8_D 0.79 0.00
159_I 47_Y 0.79 0.00
38_L 157_N 0.79 0.00
166_S 298_P 0.79 0.00
261_L 147_K 0.79 0.00
275_A 6_L 0.79 0.00
131_F 121_N 0.79 0.00
267_L 321_M 0.79 0.00
178_H 245_D 0.79 0.00
10_F 27_G 0.78 0.00
181_A 317_A 0.78 0.00
245_A 320_V 0.78 0.00
28_F 123_V 0.78 0.00
19_A 120_A 0.78 0.00
24_P 196_P 0.78 0.00
204_S 30_S 0.78 0.00
121_L 287_G 0.78 0.00
254_I 292_M 0.78 0.00
181_A 270_A 0.78 0.00
26_V 166_I 0.78 0.00
106_Y 220_L 0.78 0.00
150_G 156_A 0.78 0.00
196_G 72_A 0.78 0.00
35_V 203_I 0.78 0.00
30_I 107_D 0.78 0.00
171_F 103_S 0.78 0.00
76_Y 49_E 0.78 0.00
159_I 48_R 0.78 0.00
206_G 145_N 0.78 0.00
199_T 311_K 0.78 0.00
251_G 160_I 0.77 0.00
136_L 222_D 0.77 0.00
183_K 89_I 0.77 0.00
184_V 230_I 0.77 0.00
200_A 89_I 0.77 0.00
93_L 226_G 0.77 0.00
195_G 197_Q 0.77 0.00
198_A 160_I 0.77 0.00
251_G 333_L 0.77 0.00
271_V 259_L 0.77 0.00
276_C 90_L 0.77 0.00
168_A 195_I 0.77 0.00
11_V 172_I 0.77 0.00
246_G 29_A 0.77 0.00
34_V 78_N 0.77 0.00
138_L 293_R 0.77 0.00
206_G 261_I 0.76 0.00
233_L 256_A 0.76 0.00
91_A 338_N 0.76 0.00
19_A 330_L 0.76 0.00
164_A 87_A 0.76 0.00
48_G 226_G 0.76 0.00
14_P 171_L 0.76 0.00
264_I 157_N 0.76 0.00
180_L 31_M 0.76 0.00
277_L 247_T 0.76 0.00
205_W 54_C 0.76 0.00
202_V 77_K 0.76 0.00
31_V 152_S 0.76 0.00
14_P 87_A 0.75 0.00
107_P 230_I 0.75 0.00
189_T 193_V 0.75 0.00
36_C 268_G 0.75 0.00
25_P 253_V 0.75 0.00
56_V 131_G 0.75 0.00
224_S 39_I 0.75 0.00
139_R 306_P 0.75 0.00
98_V 131_G 0.75 0.00
266_S 314_R 0.75 0.00
202_V 63_Q 0.75 0.00
194_I 295_I 0.75 0.00
150_G 208_E 0.75 0.00
95_W 166_I 0.75 0.00
229_L 86_M 0.75 0.00
64_L 107_D 0.75 0.00
189_T 153_R 0.75 0.00
2_L 207_V 0.75 0.00
135_M 4_I 0.75 0.00
110_A 57_S 0.75 0.00
164_A 252_G 0.74 0.00
157_V 122_A 0.74 0.00
260_I 84_A 0.74 0.00
130_P 120_A 0.74 0.00
251_G 180_A 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0402 seconds.