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BAMD - RSUA
UniProt: P0AC02 - P0AA43
Length: 476
Sequences: 310
Seq/Len: 0.69
I_Prob: 0.11

BAMD - Outer membrane protein assembly factor BamD
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: BAMD
RSUA - Ribosomal small subunit pseudouridine synthase A
Paralog alert: 0.95 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
218_M 22_I 1.80 0.11
108_V 177_T 1.44 0.04
184_Y 22_I 1.42 0.04
88_A 135_T 1.35 0.03
236_K 106_T 1.33 0.03
98_L 152_V 1.29 0.03
205_Y 25_N 1.26 0.02
32_P 7_I 1.25 0.02
129_G 118_S 1.25 0.02
105_I 47_V 1.25 0.02
154_Y 118_S 1.23 0.02
122_S 92_A 1.18 0.02
234_V 147_Q 1.17 0.02
93_D 145_A 1.17 0.02
170_L 92_A 1.15 0.02
73_L 175_R 1.13 0.01
165_K 135_T 1.09 0.01
180_S 19_G 1.09 0.01
48_W 170_T 1.09 0.01
151_V 79_D 1.07 0.01
99_N 168_V 1.06 0.01
81_K 27_V 1.06 0.01
36_Y 101_L 1.04 0.01
132_R 140_V 1.03 0.01
211_T 195_N 1.02 0.01
156_N 135_T 1.02 0.01
48_W 173_Q 1.01 0.01
63_P 17_I 1.00 0.01
96_I 30_D 1.00 0.01
140_A 63_F 0.99 0.01
13_L 49_Y 0.98 0.01
216_P 23_R 0.98 0.01
17_L 38_A 0.98 0.01
181_V 198_V 0.97 0.01
105_I 146_E 0.97 0.01
114_L 119_H 0.97 0.01
79_Y 13_V 0.96 0.01
171_K 176_L 0.96 0.01
58_L 59_G 0.96 0.01
9_A 54_L 0.96 0.01
126_G 115_G 0.96 0.01
207_D 3_L 0.95 0.01
31_P 9_Q 0.95 0.01
55_L 108_L 0.95 0.01
15_L 64_M 0.95 0.01
109_M 89_E 0.94 0.01
81_K 7_I 0.94 0.01
102_H 120_R 0.94 0.01
198_V 173_Q 0.94 0.01
36_Y 109_V 0.94 0.01
52_I 43_P 0.93 0.01
124_L 69_Q 0.93 0.01
28_P 106_T 0.92 0.01
35_I 7_I 0.92 0.01
109_M 136_L 0.92 0.01
122_S 176_L 0.92 0.01
93_D 11_L 0.91 0.01
18_A 111_M 0.90 0.01
146_D 101_L 0.90 0.01
65_G 17_I 0.90 0.01
17_L 40_K 0.89 0.01
119_L 176_L 0.89 0.01
33_N 146_E 0.89 0.01
189_G 106_T 0.89 0.01
76_I 133_L 0.88 0.01
64_F 126_H 0.88 0.01
226_Q 49_Y 0.88 0.01
78_A 47_V 0.87 0.01
156_N 16_A 0.87 0.01
40_Q 56_Q 0.87 0.01
24_K 37_A 0.87 0.01
29_D 54_L 0.87 0.01
143_A 161_T 0.87 0.01
205_Y 18_A 0.87 0.01
48_W 193_V 0.86 0.01
27_V 83_V 0.86 0.01
242_S 40_K 0.86 0.01
232_E 125_R 0.85 0.01
171_K 49_Y 0.85 0.01
187_E 31_G 0.85 0.01
231_A 180_E 0.85 0.01
24_K 65_L 0.84 0.01
147_F 72_V 0.84 0.01
77_Y 180_E 0.84 0.01
231_A 32_E 0.84 0.01
45_D 66_N 0.84 0.01
237_I 111_M 0.84 0.01
75_L 19_G 0.83 0.01
15_L 54_L 0.83 0.01
211_T 197_V 0.83 0.01
22_G 10_Q 0.83 0.01
212_R 101_L 0.83 0.01
171_K 141_A 0.83 0.01
97_R 120_R 0.83 0.01
41_Q 86_F 0.83 0.01
82_N 63_F 0.83 0.01
24_K 56_Q 0.82 0.01
161_T 11_L 0.82 0.01
187_E 50_D 0.82 0.01
149_K 20_R 0.82 0.01
33_N 49_Y 0.82 0.01
18_A 9_Q 0.82 0.01
36_Y 110_L 0.82 0.01
236_K 133_L 0.82 0.01
168_V 28_T 0.81 0.01
64_F 131_T 0.81 0.01
221_A 120_R 0.81 0.01
53_T 45_H 0.81 0.01
93_D 172_T 0.81 0.01
21_S 22_I 0.81 0.01
120_D 159_D 0.81 0.01
19_G 76_D 0.81 0.01
150_L 131_T 0.81 0.01
133_S 64_M 0.81 0.01
225_M 149_A 0.81 0.01
103_P 64_M 0.80 0.01
68_S 41_L 0.80 0.01
19_G 54_L 0.80 0.00
29_D 12_G 0.80 0.00
164_T 29_V 0.79 0.00
67_Y 49_Y 0.79 0.00
35_I 109_V 0.79 0.00
88_A 13_V 0.79 0.00
216_P 135_T 0.79 0.00
152_R 56_Q 0.79 0.00
21_S 26_R 0.79 0.00
184_Y 125_R 0.79 0.00
56_E 190_F 0.79 0.00
38_T 111_M 0.79 0.00
161_T 9_Q 0.78 0.00
130_V 128_C 0.78 0.00
164_T 135_T 0.78 0.00
39_A 89_E 0.78 0.00
227_M 40_K 0.78 0.00
154_Y 60_P 0.78 0.00
53_T 115_G 0.78 0.00
240_A 191_A 0.78 0.00
165_K 145_A 0.78 0.00
150_L 195_N 0.78 0.00
75_L 37_A 0.77 0.00
206_P 113_D 0.77 0.00
210_A 19_G 0.77 0.00
208_T 47_V 0.77 0.00
226_Q 169_I 0.77 0.00
94_R 197_V 0.77 0.00
39_A 54_L 0.77 0.00
129_G 27_V 0.77 0.00
154_Y 56_Q 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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