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NIFU - TRML
UniProt: P0ACD4 - P0AGJ7
Length: 285
Sequences: 177
Seq/Len: 0.65
I_Prob: 0.04

NIFU - NifU-like protein
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NIFU
TRML - tRNA (cytidine(34)-2'-O)-methyltransferase
Paralog alert: 0.90 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: RLMB TRML
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_K 98_M 1.75 0.04
29_S 55_T 1.48 0.02
50_E 18_I 1.36 0.01
45_I 44_L 1.34 0.01
98_E 40_D 1.29 0.01
123_S 103_T 1.26 0.01
104_I 55_T 1.24 0.01
28_G 140_V 1.23 0.01
27_V 127_D 1.22 0.01
28_G 97_L 1.22 0.01
104_I 12_P 1.21 0.01
42_K 94_G 1.21 0.01
25_E 112_D 1.20 0.01
83_D 5_V 1.19 0.01
98_E 135_N 1.16 0.01
118_I 4_I 1.14 0.01
27_V 65_A 1.13 0.01
45_I 57_V 1.13 0.01
52_I 68_E 1.13 0.01
27_V 62_D 1.12 0.01
49_D 112_D 1.12 0.01
48_N 8_E 1.10 0.01
119_A 60_H 1.08 0.01
86_Q 112_D 1.07 0.01
50_E 56_A 1.05 0.01
98_E 103_T 1.05 0.01
108_I 139_V 1.03 0.01
19_S 124_M 1.00 0.01
125_R 30_H 0.98 0.01
26_N 94_G 0.98 0.01
42_K 82_G 0.97 0.01
24_D 67_L 0.95 0.00
126_E 35_M 0.94 0.00
45_I 67_L 0.94 0.00
108_I 41_D 0.94 0.00
104_I 40_D 0.94 0.00
28_G 139_V 0.93 0.00
8_I 118_Q 0.93 0.00
121_Y 120_I 0.93 0.00
98_E 55_T 0.91 0.00
83_D 88_A 0.91 0.00
77_V 69_A 0.91 0.00
121_Y 98_M 0.90 0.00
87_A 92_Q 0.90 0.00
23_N 67_L 0.90 0.00
95_E 88_A 0.89 0.00
43_L 125_V 0.88 0.00
22_N 103_T 0.88 0.00
47_V 42_K 0.87 0.00
104_I 67_L 0.87 0.00
8_I 101_P 0.87 0.00
84_E 86_H 0.86 0.00
20_F 117_E 0.86 0.00
83_D 92_Q 0.85 0.00
26_N 58_T 0.85 0.00
55_D 13_P 0.85 0.00
81_S 89_V 0.85 0.00
118_I 84_P 0.85 0.00
92_D 2_L 0.84 0.00
50_E 58_T 0.84 0.00
125_R 18_I 0.84 0.00
52_I 97_L 0.84 0.00
22_N 124_M 0.84 0.00
23_N 112_D 0.83 0.00
126_E 121_R 0.83 0.00
52_I 94_G 0.83 0.00
119_A 135_N 0.83 0.00
125_R 61_H 0.83 0.00
49_D 97_L 0.83 0.00
45_I 42_K 0.83 0.00
73_V 103_T 0.82 0.00
123_S 56_A 0.82 0.00
125_R 91_Y 0.81 0.00
118_I 17_N 0.81 0.00
82_L 3_N 0.81 0.00
123_S 36_G 0.80 0.00
8_I 119_K 0.80 0.00
92_D 36_G 0.80 0.00
86_Q 71_N 0.80 0.00
95_E 28_R 0.80 0.00
92_D 144_A 0.80 0.00
78_K 143_E 0.79 0.00
19_S 121_R 0.79 0.00
72_L 21_L 0.79 0.00
92_D 93_D 0.79 0.00
98_E 12_P 0.78 0.00
8_I 17_N 0.78 0.00
5_E 107_P 0.78 0.00
87_A 112_D 0.78 0.00
42_K 61_H 0.77 0.00
23_N 98_M 0.77 0.00
26_N 17_N 0.77 0.00
91_T 12_P 0.77 0.00
50_E 121_R 0.76 0.00
125_R 86_H 0.76 0.00
86_Q 124_M 0.76 0.00
26_N 104_R 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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