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NUOA - NUOJ
UniProt: P0AFC3 - P0AFE0
Length: 331
Sequences: 762
Seq/Len: 2.65
I_Prob: 0.99

NUOA - NADH-quinone oxidoreductase subunit A
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOA
NUOJ - NADH-quinone oxidoreductase subunit J
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoAE:JFContact Map
4he8AB:JDContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
94_E 127_K 2.42 0.99
102_E 145_S 2.29 0.99
117_L 156_F 2.17 0.99
13_H 49_Y 1.81 0.96
117_L 145_S 1.64 0.93
68_F 13_I 1.64 0.93
103_A 141_V 1.53 0.89
98_V 138_V 1.38 0.81
23_A 43_F 1.36 0.81
98_V 40_S 1.29 0.76
73_M 70_V 1.29 0.75
77_I 130_G 1.28 0.75
110_L 144_A 1.26 0.73
119_R 143_L 1.21 0.68
94_E 153_V 1.18 0.66
83_L 29_L 1.16 0.63
30_M 57_I 1.16 0.63
91_S 131_I 1.16 0.63
109_V 145_S 1.15 0.63
124_D 22_H 1.15 0.62
34_G 154_V 1.15 0.62
99_G 25_P 1.14 0.61
75_F 50_F 1.13 0.60
73_M 45_S 1.12 0.59
61_R 25_P 1.12 0.59
83_L 54_L 1.12 0.59
113_G 149_L 1.11 0.58
66_A 68_V 1.11 0.58
55_D 12_A 1.10 0.57
61_R 74_L 1.10 0.57
17_A 137_Y 1.10 0.56
63_R 75_N 1.09 0.56
96_G 142_E 1.09 0.56
71_V 70_V 1.09 0.55
75_F 69_F 1.08 0.54
13_H 63_I 1.08 0.54
99_G 38_A 1.06 0.52
108_F 56_I 1.06 0.52
15_A 70_V 1.05 0.51
87_A 141_V 1.05 0.51
102_E 142_E 1.04 0.50
117_L 142_E 1.04 0.50
111_L 57_I 1.03 0.49
96_G 129_V 1.03 0.48
10_I 136_P 1.02 0.47
118_V 71_V 1.02 0.47
55_D 67_F 1.01 0.47
99_G 96_P 1.01 0.47
40_R 147_L 1.01 0.47
121_G 20_I 1.00 0.46
101_V 168_L 0.99 0.44
37_L 167_V 0.99 0.43
82_A 68_V 0.99 0.43
119_R 45_S 0.98 0.43
109_V 146_M 0.98 0.43
110_L 148_L 0.97 0.42
14_W 133_L 0.97 0.41
34_G 49_Y 0.97 0.41
75_F 61_G 0.96 0.40
82_A 54_L 0.96 0.40
85_L 138_V 0.96 0.40
43_A 38_A 0.96 0.40
68_F 129_V 0.95 0.39
124_D 39_I 0.95 0.39
122_A 156_F 0.95 0.39
102_E 141_V 0.95 0.39
70_L 64_M 0.94 0.38
67_K 34_I 0.94 0.38
14_W 151_G 0.94 0.38
76_V 72_M 0.94 0.38
68_F 57_I 0.94 0.37
61_R 33_I 0.93 0.37
80_V 55_E 0.93 0.37
65_S 25_P 0.93 0.36
38_G 52_G 0.92 0.35
50_F 75_N 0.92 0.35
30_M 54_L 0.91 0.35
49_P 32_L 0.91 0.34
124_D 40_S 0.90 0.33
14_W 4_A 0.90 0.33
25_G 111_I 0.90 0.33
49_P 13_I 0.89 0.32
91_S 127_K 0.89 0.32
41_A 96_P 0.89 0.32
76_V 27_H 0.89 0.32
71_V 67_F 0.88 0.31
119_R 160_R 0.88 0.31
16_F 3_F 0.88 0.31
13_H 125_S 0.88 0.31
117_L 152_L 0.88 0.31
101_V 142_E 0.87 0.30
119_R 79_S 0.87 0.30
110_L 130_G 0.87 0.30
120_I 152_L 0.86 0.29
84_Y 155_A 0.86 0.29
54_I 67_F 0.86 0.29
56_S 68_V 0.86 0.29
35_W 31_Y 0.85 0.28
26_L 54_L 0.85 0.28
33_G 138_V 0.85 0.28
50_F 55_E 0.85 0.28
91_S 33_I 0.85 0.27
116_Y 51_A 0.85 0.27
14_W 74_L 0.84 0.27
98_V 31_Y 0.84 0.27
32_V 98_I 0.84 0.26
17_A 58_V 0.84 0.26
82_A 27_H 0.84 0.26
27_C 70_V 0.84 0.26
27_C 154_V 0.84 0.26
33_G 118_G 0.84 0.26
66_A 30_L 0.84 0.26
61_R 36_L 0.83 0.26
109_V 152_L 0.83 0.26
15_A 67_F 0.83 0.26
21_I 109_Y 0.83 0.26
126_T 11_I 0.83 0.25
108_F 10_L 0.82 0.25
46_K 68_V 0.82 0.25
73_M 64_M 0.82 0.25
106_F 148_L 0.82 0.25
83_L 12_A 0.82 0.24
97_W 83_Q 0.82 0.24
23_A 92_V 0.82 0.24
55_D 54_L 0.82 0.24
38_G 64_M 0.82 0.24
54_I 134_F 0.82 0.24
110_L 69_F 0.81 0.24
28_C 122_T 0.81 0.24
111_L 152_L 0.81 0.23
31_L 143_L 0.81 0.23
31_L 133_L 0.81 0.23
26_L 44_F 0.81 0.23
118_V 158_V 0.81 0.23
23_A 33_I 0.81 0.23
100_F 22_H 0.80 0.23
97_W 121_G 0.80 0.23
115_V 147_L 0.80 0.23
30_M 146_M 0.80 0.23
22_V 56_I 0.80 0.23
68_F 149_L 0.80 0.23
59_S 74_L 0.80 0.23
31_L 111_I 0.80 0.23
73_M 9_G 0.80 0.23
20_L 115_N 0.80 0.23
88_W 40_S 0.80 0.22
79_D 62_A 0.80 0.22
97_W 6_Y 0.80 0.22
101_V 13_I 0.80 0.22
96_G 8_C 0.80 0.22
100_F 18_R 0.80 0.22
120_I 156_F 0.79 0.22
85_L 163_R 0.79 0.22
89_S 140_A 0.79 0.22
37_L 53_A 0.79 0.22
125_W 141_V 0.79 0.22
22_V 104_L 0.79 0.22
57_V 159_G 0.79 0.22
73_M 65_V 0.79 0.22
73_M 25_P 0.79 0.21
122_A 144_A 0.78 0.21
27_C 64_M 0.78 0.21
65_S 159_G 0.78 0.21
19_F 71_V 0.78 0.21
92_I 162_E 0.78 0.21
36_F 113_G 0.78 0.20
77_I 21_T 0.78 0.20
74_F 32_L 0.78 0.20
93_R 95_G 0.77 0.20
87_A 156_F 0.77 0.20
119_R 14_L 0.77 0.20
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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