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NUOJ - NUOK
UniProt: P0AFE0 - P0AFE4
Length: 284
Sequences: 1009
Seq/Len: 3.75
I_Prob: 1.00

NUOJ - NADH-quinone oxidoreductase subunit J
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOJ
NUOK - NADH-quinone oxidoreductase subunit K
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoJF:KGContact Map
4he8JD:KEContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_I 13_I 3.65 1.00
17_L 17_L 3.14 1.00
6_Y 6_H 2.45 1.00
132_T 56_T 2.05 0.99
20_I 21_G 1.89 0.98
16_T 14_L 1.81 0.97
39_I 44_L 1.79 0.97
19_V 33_I 1.78 0.97
42_V 10_L 1.58 0.94
147_L 75_I 1.57 0.93
29_L 33_I 1.57 0.93
159_G 81_L 1.56 0.93
144_A 67_S 1.55 0.93
55_E 40_N 1.50 0.91
129_V 60_V 1.44 0.89
73_M 32_L 1.32 0.84
43_F 40_N 1.32 0.84
39_I 10_L 1.28 0.81
44_F 98_M 1.27 0.80
144_A 66_I 1.24 0.79
139_L 95_V 1.24 0.79
82_E 42_S 1.18 0.73
96_P 56_T 1.18 0.73
11_I 41_A 1.14 0.69
63_I 24_I 1.13 0.69
162_E 17_L 1.13 0.69
142_E 9_I 1.12 0.68
43_F 62_Y 1.12 0.68
68_V 50_G 1.09 0.65
58_V 92_I 1.08 0.64
20_I 20_T 1.08 0.64
63_I 41_A 1.08 0.63
47_G 51_S 1.07 0.63
62_A 76_G 1.07 0.63
9_G 65_A 1.07 0.63
85_R 84_H 1.07 0.63
30_L 98_M 1.07 0.63
28_A 33_I 1.06 0.62
154_V 29_L 1.06 0.61
60_A 32_L 1.05 0.61
47_G 96_S 1.05 0.60
51_A 89_N 1.05 0.60
157_H 34_G 1.04 0.59
29_L 49_A 1.01 0.55
35_S 37_I 0.99 0.53
64_M 63_I 0.98 0.53
16_T 17_L 0.98 0.53
155_A 32_L 0.98 0.52
154_V 99_R 0.98 0.52
25_P 73_A 0.97 0.51
3_F 46_F 0.97 0.50
55_E 66_I 0.96 0.50
58_V 59_Q 0.95 0.48
18_R 33_I 0.95 0.48
146_M 11_A 0.94 0.48
43_F 18_G 0.93 0.46
72_M 59_Q 0.93 0.45
48_A 47_V 0.92 0.45
139_L 82_Q 0.92 0.44
40_S 11_A 0.92 0.44
43_F 44_L 0.91 0.43
54_L 99_R 0.90 0.42
11_I 86_R 0.90 0.41
20_I 75_I 0.90 0.41
166_E 34_G 0.89 0.40
18_R 98_M 0.89 0.40
13_I 12_A 0.88 0.40
28_A 11_A 0.88 0.40
123_P 11_A 0.88 0.40
138_V 71_A 0.88 0.40
165_G 42_S 0.88 0.39
168_L 44_L 0.88 0.39
40_S 48_V 0.87 0.39
145_S 31_M 0.87 0.38
42_V 7_G 0.87 0.38
28_A 27_N 0.87 0.38
152_L 47_V 0.86 0.38
40_S 51_S 0.86 0.37
141_V 21_G 0.86 0.37
134_F 45_A 0.86 0.37
64_M 33_I 0.86 0.37
2_E 2_I 0.86 0.37
47_G 98_M 0.85 0.36
83_Q 46_F 0.85 0.36
131_I 60_V 0.85 0.35
62_A 87_R 0.84 0.35
26_V 67_S 0.84 0.35
41_G 29_L 0.84 0.34
73_M 66_I 0.84 0.34
7_I 15_F 0.84 0.34
12_A 56_T 0.84 0.34
149_L 74_S 0.83 0.34
7_I 68_L 0.83 0.33
46_L 51_S 0.83 0.33
4_A 98_M 0.83 0.33
154_V 18_G 0.83 0.33
67_F 25_R 0.82 0.33
132_T 57_D 0.82 0.33
39_I 40_N 0.82 0.33
166_E 16_V 0.82 0.32
129_V 9_I 0.82 0.32
133_L 90_L 0.81 0.32
86_Q 64_L 0.81 0.32
80_E 4_L 0.81 0.32
135_G 60_V 0.81 0.31
41_G 10_L 0.81 0.31
15_A 83_L 0.81 0.31
154_V 39_I 0.81 0.31
10_L 9_I 0.81 0.31
99_L 19_L 0.81 0.31
71_V 89_N 0.81 0.31
46_L 48_V 0.81 0.30
131_I 28_L 0.80 0.30
20_I 34_G 0.80 0.30
158_V 59_Q 0.80 0.30
141_V 43_A 0.80 0.30
71_V 67_S 0.80 0.30
105_V 60_V 0.80 0.30
145_S 85_R 0.80 0.30
95_G 25_R 0.80 0.30
46_L 52_Y 0.80 0.30
150_A 84_H 0.80 0.29
121_G 56_T 0.79 0.29
54_L 35_L 0.79 0.29
88_L 13_I 0.79 0.29
64_M 25_R 0.79 0.29
133_L 88_Q 0.79 0.28
7_I 92_I 0.79 0.28
38_A 83_L 0.79 0.28
108_V 54_G 0.79 0.28
26_V 42_S 0.79 0.28
14_L 3_P 0.78 0.28
65_V 54_G 0.78 0.28
39_I 66_I 0.78 0.27
94_I 75_I 0.77 0.27
20_I 24_I 0.77 0.26
9_G 55_Q 0.77 0.26
158_V 82_Q 0.76 0.26
144_A 78_A 0.76 0.26
39_I 14_L 0.76 0.25
100_S 17_L 0.75 0.25
126_A 59_Q 0.75 0.25
40_S 41_A 0.75 0.25
4_A 80_L 0.75 0.25
56_I 94_S 0.75 0.24
139_L 41_A 0.75 0.24
34_I 50_G 0.75 0.24
160_R 40_N 0.74 0.24
156_F 21_G 0.74 0.23
20_I 25_R 0.74 0.23
165_G 17_L 0.74 0.23
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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