GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
HPF - YHBJ
UniProt: P0AFX0 - P0A894
Length: 379
Sequences: 234
Seq/Len: 0.62
I_Prob: 0.02

HPF - Ribosome hibernation promoting factor
Paralog alert: 0.26 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HPF RAIA
YHBJ - UPF0042 nucleotide-binding protein YhbJ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YHBJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
34_I 9_R 1.70 0.02
34_I 236_N 1.58 0.01
56_V 108_K 1.47 0.01
50_S 83_L 1.40 0.01
27_L 82_L 1.40 0.01
7_G 176_D 1.39 0.01
76_G 36_L 1.33 0.01
91_K 4_M 1.31 0.01
5_I 55_I 1.29 0.01
34_I 59_N 1.25 0.01
34_I 273_Q 1.25 0.01
85_L 2_V 1.24 0.01
48_H 239_S 1.24 0.01
11_E 136_T 1.24 0.01
13_T 55_I 1.23 0.01
74_I 272_V 1.23 0.01
17_R 83_L 1.17 0.01
12_I 38_P 1.17 0.01
24_F 225_Y 1.17 0.00
93_K 171_H 1.17 0.00
11_E 272_V 1.17 0.00
20_V 53_V 1.11 0.00
53_T 5_I 1.10 0.00
34_I 86_D 1.10 0.00
17_R 38_P 1.10 0.00
52_A 7_S 1.09 0.00
7_G 191_W 1.09 0.00
26_K 243_V 1.09 0.00
85_L 251_K 1.08 0.00
59_G 191_W 1.08 0.00
61_I 243_V 1.06 0.00
33_R 126_L 1.06 0.00
83_R 21_L 1.06 0.00
67_G 40_L 1.04 0.00
27_L 130_A 1.04 0.00
90_D 96_Y 1.04 0.00
52_A 27_Y 1.03 0.00
2_Q 142_H 1.02 0.00
3_L 190_H 1.02 0.00
47_T 110_L 1.02 0.00
6_T 171_H 1.01 0.00
48_H 137_S 1.01 0.00
36_Q 9_R 1.01 0.00
12_I 155_K 1.01 0.00
10_V 243_V 1.00 0.00
17_R 277_R 1.00 0.00
76_G 278_T 0.99 0.00
30_Y 12_S 0.99 0.00
16_L 5_I 0.99 0.00
46_V 98_D 0.97 0.00
49_T 126_L 0.96 0.00
52_A 9_R 0.96 0.00
27_L 148_L 0.95 0.00
51_D 146_E 0.95 0.00
13_T 16_V 0.95 0.00
95_H 149_R 0.95 0.00
87_K 266_R 0.95 0.00
70_M 5_I 0.95 0.00
26_K 140_S 0.95 0.00
11_E 164_F 0.94 0.00
60_E 54_S 0.94 0.00
36_Q 205_V 0.93 0.00
42_K 224_S 0.93 0.00
18_E 203_K 0.93 0.00
85_L 67_F 0.93 0.00
92_L 29_V 0.93 0.00
7_G 251_K 0.93 0.00
16_L 4_M 0.93 0.00
10_V 190_H 0.92 0.00
20_V 176_D 0.91 0.00
92_L 267_S 0.91 0.00
34_I 54_S 0.91 0.00
79_D 243_V 0.91 0.00
90_D 29_V 0.91 0.00
11_E 258_A 0.91 0.00
87_K 112_L 0.90 0.00
85_L 222_T 0.90 0.00
91_K 274_S 0.90 0.00
82_A 136_T 0.90 0.00
26_K 211_R 0.90 0.00
3_L 142_H 0.90 0.00
25_A 136_T 0.89 0.00
87_K 257_I 0.89 0.00
27_L 234_E 0.89 0.00
38_Y 16_V 0.89 0.00
8_N 168_G 0.89 0.00
94_Q 258_A 0.89 0.00
91_K 109_N 0.88 0.00
84_Q 123_L 0.88 0.00
85_L 180_V 0.88 0.00
40_V 211_R 0.87 0.00
11_E 216_H 0.87 0.00
16_L 38_P 0.87 0.00
7_G 210_D 0.87 0.00
44_E 75_P 0.87 0.00
3_L 221_Q 0.87 0.00
13_T 210_D 0.86 0.00
13_T 191_W 0.86 0.00
34_I 71_M 0.86 0.00
73_A 240_Y 0.86 0.00
8_N 96_Y 0.86 0.00
77_L 256_Y 0.86 0.00
74_I 211_R 0.86 0.00
61_I 137_S 0.86 0.00
54_L 82_L 0.85 0.00
25_A 88_D 0.85 0.00
45_K 7_S 0.85 0.00
38_Y 86_D 0.85 0.00
26_K 117_D 0.85 0.00
19_F 90_N 0.85 0.00
28_E 93_I 0.85 0.00
17_R 165_E 0.85 0.00
52_A 94_R 0.85 0.00
30_Y 185_F 0.85 0.00
23_K 162_M 0.84 0.00
27_L 226_L 0.84 0.00
11_E 106_S 0.84 0.00
26_K 71_M 0.84 0.00
93_K 82_L 0.84 0.00
12_I 4_M 0.84 0.00
12_I 244_A 0.84 0.00
20_V 191_W 0.84 0.00
90_D 99_T 0.84 0.00
85_L 179_Y 0.83 0.00
69_D 218_F 0.83 0.00
63_A 99_T 0.83 0.00
82_A 114_S 0.83 0.00
29_Q 115_A 0.83 0.00
11_E 85_L 0.83 0.00
27_L 257_I 0.82 0.00
79_D 112_L 0.82 0.00
68_Q 225_Y 0.82 0.00
30_Y 238_R 0.82 0.00
52_A 191_W 0.82 0.00
7_G 55_I 0.82 0.00
49_T 219_I 0.82 0.00
13_T 229_W 0.82 0.00
10_V 149_R 0.82 0.00
82_A 5_I 0.81 0.00
50_S 44_L 0.81 0.00
73_A 12_S 0.81 0.00
81_L 6_V 0.81 0.00
7_G 3_L 0.81 0.00
88_H 21_L 0.81 0.00
23_K 102_L 0.80 0.00
90_D 36_L 0.80 0.00
61_I 88_D 0.80 0.00
66_E 106_S 0.80 0.00
73_A 279_L 0.80 0.00
76_G 235_T 0.80 0.00
58_G 277_R 0.80 0.00
11_E 223_R 0.80 0.00
70_M 140_S 0.80 0.00
13_T 256_Y 0.80 0.00
10_V 226_L 0.80 0.00
33_R 216_H 0.80 0.00
66_E 69_Q 0.79 0.00
90_D 206_A 0.79 0.00
59_G 5_I 0.79 0.00
83_R 1_M 0.79 0.00
41_L 234_E 0.79 0.00
61_I 251_K 0.79 0.00
73_A 275_R 0.79 0.00
12_I 67_F 0.79 0.00
83_R 183_V 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0241 seconds.