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SECD - YAJC
UniProt: P0AG90 - P0ADZ7
Length: 725
Sequences: 471
Seq/Len: 0.65
I_Prob: 0.08

SECD - Protein translocase subunit SecD
Paralog alert: 0.09 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECD
YAJC - UPF0092 membrane protein YajC
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YAJC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
558_I 87_D 1.81 0.08
176_L 68_L 1.34 0.02
198_P 83_I 1.26 0.02
264_Q 105_G 1.24 0.02
327_T 87_D 1.19 0.01
259_E 65_N 1.19 0.01
368_L 98_V 1.19 0.01
328_D 27_L 1.16 0.01
533_S 31_G 1.11 0.01
514_L 95_R 1.09 0.01
315_L 28_V 1.08 0.01
597_T 72_V 1.08 0.01
458_L 98_V 1.06 0.01
260_L 61_E 1.06 0.01
592_T 66_G 1.05 0.01
306_Q 91_V 1.03 0.01
558_I 53_M 1.02 0.01
328_D 72_V 1.02 0.01
499_G 33_I 1.02 0.01
530_E 64_T 1.02 0.01
328_D 12_T 1.02 0.01
250_R 74_K 1.01 0.01
365_M 71_R 1.00 0.01
368_L 28_V 0.99 0.01
591_F 70_G 0.99 0.01
254_D 95_R 0.98 0.01
562_I 60_D 0.97 0.01
2_L 39_L 0.97 0.01
29_F 85_L 0.97 0.01
272_I 83_I 0.97 0.01
397_N 45_R 0.97 0.01
418_R 63_L 0.96 0.01
538_V 48_E 0.96 0.01
554_F 95_R 0.96 0.01
329_S 95_R 0.96 0.01
445_L 37_M 0.94 0.01
466_L 72_V 0.93 0.01
205_Q 45_R 0.93 0.01
441_I 51_K 0.93 0.01
269_A 94_K 0.92 0.01
324_D 91_V 0.92 0.01
29_F 83_I 0.92 0.01
74_I 32_L 0.92 0.01
368_L 93_I 0.91 0.01
456_A 98_V 0.91 0.01
613_L 45_R 0.91 0.01
497_L 27_L 0.90 0.01
529_K 72_V 0.90 0.01
146_L 23_L 0.90 0.01
409_T 83_I 0.90 0.01
414_P 24_I 0.90 0.01
20_G 75_V 0.90 0.01
441_I 24_I 0.90 0.01
395_I 110_L 0.90 0.01
161_K 72_V 0.90 0.01
513_T 49_H 0.89 0.01
259_E 38_I 0.89 0.01
338_Q 95_R 0.89 0.01
343_I 30_F 0.89 0.01
551_S 53_M 0.88 0.01
41_R 72_V 0.88 0.01
302_S 32_L 0.88 0.01
516_V 56_I 0.88 0.01
160_E 72_V 0.88 0.01
432_P 44_K 0.87 0.01
567_L 98_V 0.87 0.01
273_L 93_I 0.87 0.01
613_L 68_L 0.87 0.01
176_L 33_I 0.86 0.01
437_E 68_L 0.85 0.00
456_A 97_F 0.85 0.00
259_E 62_V 0.85 0.00
324_D 81_I 0.84 0.00
453_G 70_G 0.84 0.00
598_R 64_T 0.84 0.00
301_D 25_L 0.84 0.00
121_M 62_V 0.84 0.00
200_L 95_R 0.84 0.00
511_V 28_V 0.84 0.00
531_E 70_G 0.84 0.00
200_L 66_G 0.83 0.00
588_T 71_R 0.83 0.00
162_G 98_V 0.83 0.00
369_F 26_M 0.83 0.00
492_G 53_M 0.83 0.00
428_A 33_I 0.83 0.00
530_E 66_G 0.82 0.00
461_L 95_R 0.82 0.00
456_A 74_K 0.82 0.00
454_L 83_I 0.82 0.00
18_V 71_R 0.82 0.00
281_F 52_L 0.82 0.00
566_I 94_K 0.82 0.00
162_G 95_R 0.82 0.00
260_L 82_A 0.81 0.00
148_E 12_T 0.81 0.00
517_A 75_V 0.81 0.00
272_I 98_V 0.81 0.00
133_F 45_R 0.81 0.00
226_A 55_S 0.81 0.00
292_A 95_R 0.80 0.00
134_L 74_K 0.80 0.00
238_V 65_N 0.80 0.00
63_T 110_L 0.80 0.00
558_I 46_T 0.80 0.00
89_E 84_A 0.80 0.00
178_I 54_D 0.79 0.00
463_V 51_K 0.79 0.00
526_E 91_V 0.79 0.00
575_I 27_L 0.79 0.00
231_I 61_E 0.79 0.00
166_T 95_R 0.79 0.00
584_I 80_Y 0.79 0.00
456_A 64_T 0.79 0.00
542_I 53_M 0.79 0.00
355_N 91_V 0.79 0.00
274_G 70_G 0.79 0.00
269_A 61_E 0.78 0.00
76_A 110_L 0.78 0.00
159_R 103_P 0.78 0.00
588_T 60_D 0.78 0.00
459_A 37_M 0.78 0.00
394_N 68_L 0.78 0.00
477_L 25_L 0.78 0.00
220_S 95_R 0.78 0.00
138_D 45_R 0.77 0.00
456_A 95_R 0.77 0.00
122_K 38_I 0.77 0.00
448_Q 77_E 0.77 0.00
355_N 33_I 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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