GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
HOLA - RECR
UniProt: P28630 - P0A7H6
Length: 544
Sequences: 846
Seq/Len: 1.64
I_Prob: 0.05

HOLA - DNA polymerase III subunit delta
Paralog alert: 0.85 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: HOLA
RECR - Recombination protein RecR
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
90_N 7_L 1.36 0.05
26_N 175_V 1.29 0.04
45_Q 179_G 1.15 0.03
91_A 142_L 1.15 0.03
63_A 54_I 1.13 0.03
221_L 75_P 1.10 0.03
258_V 20_V 1.09 0.03
321_W 146_P 1.07 0.02
208_D 30_F 1.03 0.02
90_N 147_T 1.03 0.02
200_P 24_S 1.03 0.02
177_N 184_V 1.02 0.02
216_H 140_V 1.01 0.02
259_N 22_P 1.00 0.02
70_A 44_A 1.00 0.02
170_L 132_L 1.00 0.02
284_G 169_S 0.97 0.02
167_N 136_K 0.96 0.02
286_M 115_L 0.94 0.01
22_L 195_G 0.94 0.01
214_P 112_L 0.94 0.01
70_A 16_C 0.94 0.01
206_V 181_L 0.94 0.01
186_E 87_E 0.93 0.01
158_L 99_G 0.93 0.01
175_E 31_T 0.92 0.01
112_V 109_M 0.92 0.01
80_L 116_D 0.92 0.01
194_D 137_I 0.91 0.01
220_A 199_I 0.91 0.01
301_A 171_I 0.91 0.01
156_K 169_S 0.90 0.01
39_R 74_N 0.90 0.01
209_A 112_L 0.88 0.01
235_Q 44_A 0.88 0.01
131_A 43_L 0.88 0.01
81_L 161_C 0.88 0.01
325_E 190_S 0.88 0.01
96_Q 103_G 0.87 0.01
242_E 146_P 0.86 0.01
224_G 66_Q 0.86 0.01
19_A 180_E 0.86 0.01
206_V 43_L 0.86 0.01
330_L 24_S 0.86 0.01
322_A 50_A 0.86 0.01
139_C 51_M 0.85 0.01
34_S 42_R 0.85 0.01
223_M 82_Q 0.85 0.01
50_H 53_E 0.85 0.01
228_R 83_I 0.84 0.01
211_H 142_L 0.84 0.01
128_T 50_A 0.84 0.01
38_V 107_V 0.84 0.01
197_L 177_V 0.84 0.01
197_L 47_L 0.84 0.01
328_S 157_I 0.84 0.01
85_P 91_D 0.84 0.01
49_E 152_A 0.83 0.01
34_S 54_I 0.83 0.01
304_L 135_E 0.83 0.01
256_L 74_N 0.83 0.01
280_Q 169_S 0.82 0.01
263_Q 159_E 0.82 0.01
238_L 177_V 0.82 0.01
38_V 101_F 0.82 0.01
77_R 47_L 0.82 0.01
320_V 74_N 0.81 0.01
14_N 118_I 0.81 0.01
109_L 192_S 0.81 0.01
33_E 42_R 0.81 0.01
76_S 193_L 0.81 0.01
42_A 89_P 0.80 0.01
170_L 82_Q 0.80 0.01
96_Q 144_T 0.80 0.01
331_L 20_V 0.80 0.01
184_A 124_G 0.80 0.01
26_N 157_I 0.80 0.01
57_P 98_T 0.80 0.01
16_G 14_L 0.79 0.01
34_S 191_H 0.79 0.01
50_H 83_I 0.79 0.01
163_D 31_T 0.79 0.01
134_S 176_P 0.79 0.01
213_T 101_F 0.79 0.01
249_T 179_G 0.79 0.01
197_L 33_L 0.79 0.01
147_L 14_L 0.79 0.01
44_A 103_G 0.79 0.01
26_N 147_T 0.79 0.01
70_A 151_E 0.78 0.01
139_C 90_A 0.78 0.01
198_T 138_T 0.78 0.01
153_A 167_E 0.78 0.01
11_A 64_T 0.78 0.01
68_C 63_F 0.77 0.01
332_C 33_L 0.77 0.01
309_E 171_I 0.77 0.01
181_L 129_E 0.77 0.01
214_P 94_A 0.77 0.01
16_G 43_L 0.77 0.01
67_L 157_I 0.76 0.01
149_R 73_S 0.76 0.01
26_N 184_V 0.76 0.01
151_V 142_L 0.76 0.01
308_T 14_L 0.76 0.01
306_T 112_L 0.76 0.01
163_D 160_L 0.75 0.01
97_L 195_G 0.75 0.01
24_L 190_S 0.75 0.01
333_H 147_T 0.75 0.01
39_R 85_V 0.75 0.01
138_T 106_F 0.75 0.01
250_L 118_I 0.74 0.01
106_D 142_L 0.74 0.01
134_S 157_I 0.74 0.01
24_L 192_S 0.74 0.01
177_N 175_V 0.74 0.01
222_L 171_I 0.74 0.01
74_F 11_M 0.74 0.01
143_E 76_R 0.74 0.01
197_L 145_N 0.74 0.01
77_R 64_T 0.74 0.01
170_L 101_F 0.74 0.01
11_A 101_F 0.74 0.01
64_I 123_I 0.74 0.01
93_I 92_I 0.74 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0264 seconds.