GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
HOLC - LPTF
UniProt: P28905 - P0AF98
Length: 513
Sequences: 374
Seq/Len: 0.74
I_Prob: 0.04

HOLC - DNA polymerase III subunit chi
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HOLC
LPTF - Lipopolysaccharide export system permease protein LptF
Paralog alert: 0.89 [within 20: 0.44] - ratio of genomes with paralogs
Cluster includes: LPTF LPTG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_I 252_R 1.68 0.04
82_I 112_V 1.66 0.04
45_D 336_L 1.64 0.03
82_I 16_L 1.50 0.02
122_S 111_I 1.36 0.02
25_V 266_L 1.33 0.01
66_P 207_L 1.33 0.01
80_V 285_P 1.29 0.01
4_A 82_E 1.26 0.01
45_D 344_V 1.24 0.01
117_V 83_S 1.22 0.01
26_C 207_L 1.21 0.01
141_L 224_I 1.20 0.01
4_A 131_V 1.20 0.01
62_E 67_S 1.16 0.01
28_I 167_S 1.15 0.01
122_S 270_I 1.12 0.01
82_I 272_L 1.11 0.01
82_I 152_A 1.10 0.01
86_Q 282_M 1.08 0.01
132_K 287_S 1.08 0.01
97_I 146_Q 1.08 0.01
121_D 111_I 1.06 0.01
53_D 207_L 1.05 0.01
133_A 93_L 1.04 0.01
115_D 38_A 1.04 0.01
41_I 172_V 1.04 0.01
47_K 130_E 1.03 0.01
131_Y 284_V 1.03 0.01
38_R 270_I 1.02 0.01
39_V 83_S 1.02 0.01
112_E 205_V 1.02 0.01
45_D 110_A 1.02 0.01
114_V 90_A 1.02 0.01
25_V 317_K 1.02 0.01
113_V 86_T 1.01 0.01
135_R 299_M 1.01 0.01
63_S 126_R 1.01 0.01
71_G 32_V 1.01 0.01
8_L 101_A 1.00 0.01
14_T 207_L 0.99 0.01
38_R 344_V 0.99 0.01
82_I 193_G 0.98 0.01
97_I 164_V 0.98 0.01
66_P 46_N 0.98 0.01
4_A 235_G 0.97 0.01
86_Q 341_L 0.97 0.01
16_D 360_F 0.97 0.01
47_K 336_L 0.97 0.01
104_A 172_V 0.97 0.01
58_A 322_K 0.96 0.01
132_K 289_V 0.96 0.01
116_F 311_L 0.96 0.01
24_L 271_T 0.96 0.01
46_E 172_V 0.96 0.01
80_V 107_V 0.96 0.01
25_V 207_L 0.96 0.01
127_A 82_E 0.96 0.01
46_E 107_V 0.95 0.01
98_S 21_I 0.95 0.00
127_A 48_V 0.95 0.00
8_L 6_Y 0.95 0.00
116_F 48_V 0.95 0.00
115_D 41_G 0.94 0.00
58_A 71_G 0.94 0.00
102_S 25_I 0.94 0.00
49_A 3_I 0.93 0.00
82_I 357_R 0.93 0.00
101_T 49_L 0.93 0.00
43_C 49_L 0.93 0.00
63_S 17_A 0.93 0.00
8_L 288_V 0.93 0.00
126_L 326_D 0.93 0.00
36_G 113_A 0.92 0.00
47_K 241_L 0.92 0.00
117_V 10_E 0.92 0.00
111_T 103_M 0.92 0.00
61_A 263_R 0.91 0.00
82_I 336_L 0.91 0.00
122_S 166_G 0.91 0.00
39_V 62_L 0.91 0.00
32_R 83_S 0.90 0.00
95_I 205_V 0.90 0.00
7_Y 135_A 0.90 0.00
116_F 264_A 0.90 0.00
97_I 36_G 0.90 0.00
34_R 49_L 0.90 0.00
113_V 295_R 0.90 0.00
65_V 118_M 0.90 0.00
127_A 59_M 0.90 0.00
111_T 51_L 0.90 0.00
54_E 112_V 0.89 0.00
81_E 209_Q 0.89 0.00
47_K 337_I 0.89 0.00
4_A 153_T 0.89 0.00
127_A 300_L 0.88 0.00
114_V 76_L 0.88 0.00
102_S 270_I 0.88 0.00
64_F 83_S 0.88 0.00
50_Y 134_E 0.88 0.00
74_P 172_V 0.88 0.00
55_A 117_V 0.87 0.00
43_C 207_L 0.87 0.00
78_A 19_L 0.87 0.00
80_V 248_Q 0.87 0.00
4_A 32_V 0.87 0.00
95_I 83_S 0.87 0.00
99_L 268_W 0.87 0.00
3_N 285_P 0.87 0.00
113_V 18_I 0.86 0.00
9_L 86_T 0.86 0.00
39_V 341_L 0.86 0.00
131_Y 286_L 0.86 0.00
26_C 313_Q 0.86 0.00
25_V 213_F 0.86 0.00
141_L 346_N 0.86 0.00
78_A 304_L 0.86 0.00
63_S 340_A 0.86 0.00
80_V 201_G 0.86 0.00
66_P 5_R 0.86 0.00
95_I 35_L 0.86 0.00
110_F 193_G 0.86 0.00
101_T 282_M 0.86 0.00
135_R 220_R 0.86 0.00
117_V 59_M 0.85 0.00
99_L 345_L 0.85 0.00
29_A 54_L 0.85 0.00
30_A 326_D 0.85 0.00
87_K 217_A 0.85 0.00
96_L 51_L 0.85 0.00
41_I 255_W 0.85 0.00
71_G 113_A 0.85 0.00
142_N 175_A 0.85 0.00
41_I 347_L 0.85 0.00
64_F 265_E 0.84 0.00
104_A 316_L 0.84 0.00
30_A 137_A 0.84 0.00
118_P 15_Q 0.84 0.00
132_K 115_V 0.84 0.00
58_A 184_R 0.84 0.00
43_C 63_I 0.84 0.00
53_D 205_V 0.84 0.00
122_S 49_L 0.84 0.00
34_R 331_M 0.84 0.00
69_L 82_E 0.84 0.00
71_G 54_L 0.84 0.00
99_L 262_A 0.83 0.00
123_L 164_V 0.83 0.00
95_I 25_I 0.83 0.00
38_R 63_I 0.83 0.00
26_C 51_L 0.83 0.00
134_Y 41_G 0.83 0.00
131_Y 63_I 0.83 0.00
132_K 87_V 0.83 0.00
79_P 51_L 0.83 0.00
61_A 209_Q 0.83 0.00
55_A 69_F 0.83 0.00
63_S 336_L 0.83 0.00
145_T 229_D 0.82 0.00
124_K 275_T 0.82 0.00
21_V 94_S 0.82 0.00
33_W 332_W 0.82 0.00
47_K 107_V 0.82 0.00
78_A 27_F 0.82 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0318 seconds.