GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
NIKD - YCII
UniProt: P33593 - P0AB55
Length: 352
Sequences: 334
Seq/Len: 1.00
I_Prob: 0.00

NIKD - Nickel import ATP-binding protein NikD
Paralog alert: 0.95 [within 20: 0.89] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
YCII - Protein YciI
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YCII
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
78_G 91_V 0.98 0.00
218_K 26_A 0.91 0.00
110_G 3_Y 0.91 0.00
162_I 10_K 0.91 0.00
32_L 76_D 0.89 0.00
68_G 8_Q 0.87 0.00
19_V 13_S 0.78 0.00
100_T 12_D 0.73 0.00
13_Q 66_E 0.73 0.00
79_I 19_S 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0194 seconds.