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AMIA - YJEE
UniProt: P36548 - P0AF67
Length: 442
Sequences: 276
Seq/Len: 0.74
I_Prob: 0.13

AMIA - N-acetylmuramoyl-L-alanine amidase AmiA
Paralog alert: 0.47 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: AMIA AMIB AMIC
YJEE - UPF0079 ATP-binding protein YjeE
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YJEE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
59_V 107_V 1.80 0.13
245_F 118_P 1.31 0.03
132_I 36_D 1.27 0.03
96_R 137_V 1.22 0.03
120_I 90_L 1.21 0.03
200_N 90_L 1.18 0.02
200_N 93_M 1.15 0.02
272_V 111_Q 1.14 0.02
233_S 97_D 1.13 0.02
268_I 105_C 1.10 0.02
216_H 147_L 1.09 0.02
158_A 84_L 1.09 0.02
130_M 72_D 1.09 0.02
197_T 47_G 1.06 0.01
194_Q 95_I 1.06 0.01
136_G 24_A 1.05 0.01
89_K 25_C 1.05 0.01
220_S 22_A 1.05 0.01
130_M 76_V 1.04 0.01
60_V 86_D 1.03 0.01
267_A 103_A 1.03 0.01
260_F 103_A 1.02 0.01
61_L 86_D 1.02 0.01
82_H 15_L 1.02 0.01
205_G 107_V 1.02 0.01
158_A 95_I 1.01 0.01
60_V 63_Y 1.01 0.01
257_T 72_D 1.00 0.01
252_E 14_T 1.00 0.01
233_S 120_P 1.00 0.01
145_A 132_G 1.00 0.01
246_I 17_L 0.99 0.01
182_D 135_A 0.99 0.01
87_I 75_M 0.97 0.01
142_A 49_L 0.97 0.01
173_V 6_I 0.95 0.01
192_L 65_L 0.95 0.01
244_S 93_M 0.94 0.01
139_N 81_L 0.92 0.01
118_V 84_L 0.92 0.01
194_Q 96_R 0.92 0.01
199_K 112_Q 0.92 0.01
214_P 145_E 0.92 0.01
205_G 88_E 0.91 0.01
63_P 116_V 0.91 0.01
99_G 113_G 0.91 0.01
239_V 99_F 0.91 0.01
243_T 11_E 0.91 0.01
140_P 139_A 0.90 0.01
162_Y 144_G 0.90 0.01
89_K 98_Y 0.89 0.01
61_L 18_G 0.89 0.01
158_A 90_L 0.89 0.01
84_V 59_K 0.88 0.01
100_I 14_T 0.88 0.01
68_I 110_P 0.88 0.01
123_K 81_L 0.88 0.01
193_V 98_Y 0.88 0.01
262_Q 15_L 0.87 0.01
149_A 14_T 0.86 0.01
70_T 110_P 0.86 0.01
104_L 24_A 0.86 0.01
200_N 84_L 0.86 0.01
188_V 147_L 0.86 0.01
205_G 87_P 0.86 0.01
244_S 113_G 0.85 0.01
59_V 10_D 0.85 0.01
99_G 65_L 0.85 0.01
197_T 58_V 0.85 0.01
157_S 132_G 0.85 0.01
260_F 98_Y 0.85 0.01
148_F 99_F 0.85 0.01
171_D 50_Q 0.84 0.01
239_V 79_F 0.84 0.01
253_R 137_V 0.84 0.01
151_S 16_D 0.84 0.01
188_V 112_Q 0.83 0.01
250_E 20_R 0.83 0.01
272_V 146_L 0.83 0.01
261_R 34_Y 0.83 0.01
204_L 103_A 0.83 0.01
264_I 122_V 0.82 0.01
152_N 28_A 0.82 0.01
111_F 92_F 0.82 0.01
156_S 130_A 0.82 0.01
220_S 111_Q 0.81 0.01
146_S 117_L 0.81 0.01
192_L 111_Q 0.81 0.01
213_K 87_P 0.81 0.01
118_V 90_L 0.81 0.01
194_Q 86_D 0.80 0.01
197_T 84_L 0.80 0.01
166_R 107_V 0.80 0.01
205_G 110_P 0.80 0.01
227_A 31_I 0.80 0.01
90_N 48_F 0.80 0.01
63_P 86_D 0.80 0.01
263_K 131_Q 0.80 0.01
78_S 122_V 0.80 0.01
180_D 131_Q 0.80 0.01
139_N 137_V 0.79 0.01
257_T 107_V 0.79 0.01
188_V 111_Q 0.79 0.01
233_S 47_G 0.79 0.01
136_G 114_T 0.79 0.01
98_H 47_G 0.79 0.01
186_Q 17_L 0.79 0.01
82_H 2_M 0.79 0.01
258_A 20_R 0.79 0.01
75_R 52_L 0.78 0.01
270_E 16_D 0.78 0.01
197_T 57_N 0.78 0.01
111_F 111_Q 0.78 0.01
118_V 92_F 0.78 0.01
125_G 142_S 0.78 0.01
185_L 58_V 0.78 0.01
142_A 132_G 0.78 0.01
125_G 73_N 0.77 0.01
105_T 139_A 0.77 0.01
149_A 95_I 0.77 0.01
84_V 118_P 0.77 0.01
101_D 51_A 0.77 0.01
267_A 107_V 0.77 0.01
149_A 96_R 0.77 0.01
56_K 149_A 0.76 0.01
87_I 107_V 0.76 0.01
86_A 10_D 0.76 0.01
120_I 95_I 0.76 0.01
104_L 140_V 0.76 0.01
188_V 47_G 0.76 0.01
268_I 77_Y 0.76 0.01
107_S 114_T 0.76 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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