GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
ALSB - RRAA
UniProt: P39265 - P0A8R0
Length: 472
Sequences: 263
Seq/Len: 0.60
I_Prob: 0.03

ALSB - D-allose-binding periplasmic protein
Paralog alert: 0.90 [within 20: 0.53] - ratio of genomes with paralogs
Cluster includes: ALSB ARAF ASCG CRA CYTR DGAL EBGR GALR GALS GNTR IDNR LACI LSRB MALI PURR RBSB RBSR TORT TRER XYLF YCJW YPHF YTFQ
RRAA - Regulator of ribonuclease activity A
Paralog alert: 0.32 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RRAA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
251_G 60_V 1.75 0.03
268_V 91_V 1.22 0.01
75_F 23_F 1.17 0.01
171_G 75_D 1.11 0.01
207_A 62_V 1.10 0.01
147_F 106_D 1.10 0.01
304_V 138_F 1.07 0.01
114_D 60_V 1.03 0.00
133_V 57_R 1.01 0.00
212_Q 63_V 1.01 0.00
64_S 146_A 0.99 0.00
208_T 112_M 0.98 0.00
87_A 112_M 0.98 0.00
42_M 129_V 0.94 0.00
220_I 106_D 0.92 0.00
247_V 62_V 0.92 0.00
226_T 60_V 0.91 0.00
209_N 144_L 0.89 0.00
146_S 129_V 0.88 0.00
88_F 53_E 0.88 0.00
128_N 106_D 0.87 0.00
231_V 145_Y 0.87 0.00
46_I 90_L 0.86 0.00
55_V 100_D 0.86 0.00
190_L 102_L 0.85 0.00
251_G 37_I 0.85 0.00
251_G 13_Q 0.84 0.00
189_K 91_V 0.84 0.00
211_L 13_Q 0.83 0.00
211_L 83_V 0.83 0.00
211_L 54_Q 0.82 0.00
133_V 141_G 0.81 0.00
243_K 96_V 0.80 0.00
267_T 87_W 0.80 0.00
215_P 160_I 0.80 0.00
218_K 43_E 0.79 0.00
268_V 159_D 0.79 0.00
38_F 144_L 0.79 0.00
87_A 144_L 0.78 0.00
232_A 23_F 0.78 0.00
191_V 8_L 0.78 0.00
302_K 157_P 0.78 0.00
242_G 83_V 0.78 0.00
209_N 75_D 0.78 0.00
143_K 37_I 0.78 0.00
268_V 83_V 0.78 0.00
165_K 154_S 0.78 0.00
179_T 160_I 0.77 0.00
176_N 138_F 0.77 0.00
75_F 75_D 0.77 0.00
102_R 156_D 0.76 0.00
104_W 143_H 0.76 0.00
246_V 118_G 0.75 0.00
94_V 60_V 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0319 seconds.