GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
GSPE - GSPG
UniProt: P45759 - P41442
Length: 638
Sequences: 398
Seq/Len: 0.64
I_Prob: 0.02

GSPE - Putative type II secretion system protein E
Paralog alert: 0.56 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: GSPE HOFB
GSPG - Putative type II secretion system protein G
Paralog alert: 0.29 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: GSPG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
272_N 93_G 1.71 0.02
437_P 123_A 1.32 0.01
470_K 28_L 1.27 0.01
256_S 109_L 1.25 0.01
211_L 19_I 1.22 0.01
256_S 41_D 1.21 0.01
272_N 16_M 1.20 0.01
177_I 68_T 1.19 0.01
211_L 49_I 1.19 0.01
272_N 63_N 1.17 0.01
206_R 93_G 1.13 0.01
343_L 31_P 1.12 0.01
112_I 93_G 1.10 0.01
371_G 120_L 1.08 0.00
296_V 28_L 1.07 0.00
367_S 23_G 1.07 0.00
238_I 123_A 1.07 0.00
306_A 98_L 1.06 0.00
211_L 47_S 1.05 0.00
266_L 54_N 1.05 0.00
452_L 49_I 1.04 0.00
412_P 34_M 1.04 0.00
288_G 16_M 1.03 0.00
317_V 79_A 1.02 0.00
280_V 23_G 0.99 0.00
442_A 109_L 0.99 0.00
226_M 81_T 0.98 0.00
438_E 120_L 0.97 0.00
429_I 70_N 0.97 0.00
244_I 40_A 0.97 0.00
214_K 25_L 0.96 0.00
256_S 33_L 0.96 0.00
276_V 54_N 0.95 0.00
256_S 47_S 0.94 0.00
433_M 13_L 0.94 0.00
190_R 26_A 0.94 0.00
48_Q 123_A 0.93 0.00
299_S 21_I 0.93 0.00
108_V 119_D 0.93 0.00
62_L 49_I 0.93 0.00
138_I 113_G 0.92 0.00
327_Q 118_Y 0.92 0.00
423_Y 84_P 0.91 0.00
303_G 44_K 0.91 0.00
368_S 60_K 0.90 0.00
183_I 59_Y 0.90 0.00
150_L 44_K 0.90 0.00
24_G 129_M 0.89 0.00
209_L 138_W 0.89 0.00
272_N 48_D 0.89 0.00
206_R 16_M 0.89 0.00
356_R 64_H 0.88 0.00
188_G 30_V 0.88 0.00
380_R 137_N 0.88 0.00
99_L 61_L 0.88 0.00
226_M 136_T 0.87 0.00
175_K 38_E 0.87 0.00
372_I 60_K 0.86 0.00
40_I 106_D 0.86 0.00
363_F 16_M 0.86 0.00
153_N 13_L 0.85 0.00
138_I 123_A 0.85 0.00
329_A 126_D 0.85 0.00
183_I 105_N 0.84 0.00
206_R 63_N 0.84 0.00
49_T 11_T 0.84 0.00
241_P 112_P 0.84 0.00
170_L 123_A 0.84 0.00
24_G 71_Q 0.84 0.00
333_S 15_I 0.84 0.00
92_E 92_E 0.84 0.00
468_L 22_I 0.84 0.00
203_Y 69_T 0.84 0.00
148_T 32_N 0.84 0.00
285_E 60_K 0.83 0.00
328_I 23_G 0.83 0.00
25_E 8_R 0.83 0.00
440_R 23_G 0.83 0.00
292_V 32_N 0.83 0.00
194_V 15_I 0.83 0.00
456_V 46_V 0.83 0.00
317_V 54_N 0.83 0.00
274_L 96_K 0.83 0.00
393_P 123_A 0.83 0.00
167_M 119_D 0.83 0.00
347_S 57_D 0.82 0.00
326_A 45_A 0.82 0.00
149_I 71_Q 0.82 0.00
190_R 11_T 0.82 0.00
166_V 28_L 0.82 0.00
368_S 79_A 0.82 0.00
78_Q 139_G 0.82 0.00
267_N 118_Y 0.82 0.00
98_D 93_G 0.82 0.00
160_L 59_Y 0.82 0.00
30_A 68_T 0.82 0.00
188_G 20_V 0.81 0.00
348_A 33_L 0.81 0.00
91_E 117_A 0.81 0.00
443_I 72_G 0.81 0.00
108_V 45_A 0.81 0.00
292_V 125_P 0.81 0.00
33_P 33_L 0.81 0.00
350_G 96_K 0.81 0.00
282_Y 29_V 0.81 0.00
104_S 15_I 0.81 0.00
93_M 129_M 0.81 0.00
428_A 17_V 0.81 0.00
307_I 99_P 0.80 0.00
293_N 93_G 0.80 0.00
258_T 65_H 0.80 0.00
308_L 54_N 0.80 0.00
161_I 57_D 0.80 0.00
269_P 52_L 0.80 0.00
108_V 115_H 0.80 0.00
171_D 137_N 0.80 0.00
440_R 26_A 0.80 0.00
16_R 15_I 0.79 0.00
419_H 68_T 0.79 0.00
343_L 58_M 0.79 0.00
247_V 35_G 0.79 0.00
484_V 35_G 0.79 0.00
79_D 11_T 0.79 0.00
232_Q 78_E 0.79 0.00
262_I 129_M 0.79 0.00
374_A 120_L 0.79 0.00
483_R 99_P 0.79 0.00
87_L 120_L 0.79 0.00
213_D 26_A 0.78 0.00
234_L 57_D 0.78 0.00
135_T 42_K 0.78 0.00
418_C 21_I 0.78 0.00
415_C 21_I 0.78 0.00
140_F 23_G 0.78 0.00
295_R 16_M 0.78 0.00
237_L 11_T 0.78 0.00
213_D 129_M 0.78 0.00
454_R 105_N 0.78 0.00
272_N 30_V 0.78 0.00
234_L 11_T 0.78 0.00
372_I 34_M 0.78 0.00
173_A 115_H 0.78 0.00
471_V 43_Q 0.78 0.00
83_S 118_Y 0.78 0.00
185_L 98_L 0.77 0.00
382_C 21_I 0.77 0.00
192_I 93_G 0.77 0.00
332_A 34_M 0.77 0.00
98_D 63_N 0.77 0.00
209_L 69_T 0.77 0.00
477_S 23_G 0.77 0.00
430_H 50_V 0.77 0.00
451_A 52_L 0.77 0.00
385_C 21_I 0.77 0.00
350_G 53_E 0.77 0.00
138_I 116_G 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0111 seconds.