GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
GSPI - GSPJ
UniProt: P45760 - P45761
Length: 320
Sequences: 217
Seq/Len: 0.73
I_Prob: 0.05

GSPI - Putative type II secretion system protein I
Paralog alert: 0.18 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: GSPI
GSPJ - Putative type II secretion system protein J
Paralog alert: 0.18 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: GSPJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
19_F 30_I 1.71 0.05
19_F 20_F 1.70 0.05
10_L 48_F 1.51 0.03
10_L 46_Q 1.44 0.02
55_Q 169_Q 1.43 0.02
17_S 34_A 1.39 0.02
87_S 19_I 1.33 0.02
51_D 85_F 1.33 0.02
23_A 30_I 1.27 0.01
7_M 145_N 1.26 0.01
48_W 172_F 1.24 0.01
25_T 31_F 1.21 0.01
13_L 93_L 1.21 0.01
10_L 20_F 1.21 0.01
13_L 60_N 1.21 0.01
78_W 99_A 1.20 0.01
47_L 130_A 1.19 0.01
19_F 26_L 1.18 0.01
43_E 27_A 1.18 0.01
4_Q 5_Q 1.18 0.01
97_I 110_R 1.17 0.01
73_I 30_I 1.16 0.01
25_T 46_Q 1.14 0.01
27_M 17_L 1.14 0.01
80_W 166_G 1.12 0.01
61_G 49_N 1.12 0.01
78_W 94_A 1.10 0.01
41_R 44_E 1.10 0.01
78_W 20_F 1.10 0.01
13_L 117_A 1.10 0.01
108_S 143_E 1.09 0.01
20_T 23_L 1.09 0.01
60_F 175_P 1.08 0.01
18_I 76_I 1.07 0.01
92_L 150_Q 1.07 0.01
14_L 105_V 1.04 0.01
41_R 95_P 1.04 0.01
33_Q 37_L 1.04 0.01
95_R 32_S 1.03 0.01
26_L 34_A 1.03 0.01
10_L 54_T 1.03 0.01
51_D 46_Q 1.03 0.01
82_S 103_L 1.02 0.01
65_T 103_L 1.01 0.01
33_Q 64_Q 1.01 0.01
23_A 20_F 1.00 0.01
48_W 55_I 1.00 0.01
40_M 67_A 1.00 0.01
18_I 168_L 0.99 0.01
55_Q 97_S 0.99 0.01
115_I 145_N 0.99 0.01
28_S 20_F 0.97 0.01
41_R 108_Y 0.97 0.01
24_L 161_Q 0.97 0.01
76_E 156_V 0.97 0.01
92_L 117_A 0.97 0.01
81_R 133_M 0.96 0.01
18_I 75_K 0.96 0.01
63_E 5_Q 0.96 0.01
31_Q 168_L 0.95 0.01
24_L 155_S 0.94 0.01
53_Q 142_L 0.94 0.01
30_M 35_S 0.94 0.01
74_N 166_G 0.94 0.01
79_N 151_E 0.93 0.01
29_S 125_R 0.93 0.01
74_N 43_K 0.93 0.01
97_I 101_T 0.93 0.01
96_T 27_A 0.93 0.01
51_D 158_L 0.92 0.01
41_R 115_Y 0.92 0.01
27_M 130_A 0.92 0.01
74_N 98_E 0.92 0.01
66_S 45_I 0.92 0.01
95_R 46_Q 0.92 0.01
97_I 114_L 0.91 0.00
23_A 82_E 0.91 0.00
12_V 170_R 0.91 0.00
80_W 144_S 0.91 0.00
14_L 42_Q 0.91 0.00
116_D 43_K 0.90 0.00
48_W 59_D 0.90 0.00
29_S 37_L 0.90 0.00
12_V 17_L 0.90 0.00
84_I 119_R 0.89 0.00
39_R 169_Q 0.89 0.00
30_M 37_L 0.89 0.00
78_W 52_Q 0.89 0.00
73_I 29_M 0.89 0.00
39_R 28_F 0.89 0.00
13_L 58_L 0.89 0.00
54_L 32_S 0.89 0.00
41_R 40_R 0.89 0.00
84_I 24_S 0.89 0.00
19_F 24_S 0.89 0.00
48_W 170_R 0.88 0.00
18_I 158_L 0.88 0.00
106_T 78_V 0.88 0.00
12_V 36_E 0.88 0.00
78_W 92_P 0.88 0.00
20_T 63_L 0.88 0.00
97_I 35_S 0.87 0.00
109_L 147_G 0.87 0.00
30_M 108_Y 0.87 0.00
31_Q 120_T 0.87 0.00
5_S 111_N 0.87 0.00
110_T 172_F 0.87 0.00
25_T 176_E 0.87 0.00
76_E 20_F 0.87 0.00
108_S 27_A 0.87 0.00
69_G 144_S 0.87 0.00
82_S 172_F 0.86 0.00
5_S 136_H 0.86 0.00
24_L 14_M 0.86 0.00
22_V 30_I 0.86 0.00
110_T 78_V 0.86 0.00
89_D 99_A 0.86 0.00
17_S 18_A 0.86 0.00
42_N 27_A 0.86 0.00
23_A 32_S 0.86 0.00
97_I 171_R 0.85 0.00
18_I 118_V 0.85 0.00
90_G 121_S 0.85 0.00
77_E 24_S 0.85 0.00
26_L 17_L 0.85 0.00
63_E 141_L 0.85 0.00
72_L 106_H 0.85 0.00
40_M 84_I 0.84 0.00
112_Y 103_L 0.84 0.00
77_E 47_Q 0.84 0.00
48_W 11_L 0.84 0.00
3_K 4_R 0.84 0.00
94_E 77_M 0.84 0.00
28_S 100_Q 0.84 0.00
38_E 160_L 0.84 0.00
67_S 163_Q 0.84 0.00
85_H 36_E 0.84 0.00
57_Q 154_L 0.84 0.00
93_L 111_N 0.83 0.00
42_N 43_K 0.83 0.00
100_T 37_L 0.83 0.00
116_D 13_V 0.83 0.00
109_L 52_Q 0.83 0.00
76_E 54_T 0.83 0.00
83_D 13_V 0.83 0.00
57_Q 21_S 0.82 0.00
32_G 172_F 0.82 0.00
13_L 119_R 0.82 0.00
111_R 55_I 0.82 0.00
48_W 102_L 0.82 0.00
5_S 54_T 0.81 0.00
20_T 153_P 0.81 0.00
45_L 47_Q 0.81 0.00
13_L 148_E 0.81 0.00
44_T 95_P 0.81 0.00
32_G 119_R 0.81 0.00
112_Y 86_T 0.81 0.00
42_N 105_V 0.81 0.00
51_D 45_I 0.81 0.00
112_Y 96_L 0.81 0.00
12_V 95_P 0.81 0.00
84_I 27_A 0.81 0.00
16_M 21_S 0.81 0.00
13_L 67_A 0.81 0.00
92_L 96_L 0.80 0.00
45_L 37_L 0.80 0.00
18_I 105_V 0.80 0.00
90_G 136_H 0.80 0.00
24_L 137_V 0.80 0.00
50_A 70_N 0.80 0.00
74_N 41_S 0.80 0.00
42_N 65_L 0.80 0.00
76_E 105_V 0.80 0.00
89_D 20_F 0.80 0.00
61_G 103_L 0.79 0.00
24_L 106_H 0.79 0.00
91_T 36_E 0.79 0.00
29_S 169_Q 0.79 0.00
114_S 119_R 0.79 0.00
35_N 23_L 0.79 0.00
72_L 166_G 0.79 0.00
8_T 58_L 0.79 0.00
13_L 120_T 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0306 seconds.