GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
RNFE - RNFG
UniProt: P77179 - P77285
Length: 437
Sequences: 731
Seq/Len: 1.76
I_Prob: 0.90

RNFE - Electron transport complex protein RnfE
Paralog alert: 0.31 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNFA RNFE
RNFG - Electron transport complex protein RnfG
Paralog alert: 0.35 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNFG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
188_L 160_V 1.89 0.90
85_M 27_N 1.87 0.90
67_I 12_L 1.85 0.89
146_G 171_T 1.45 0.66
121_K 85_D 1.30 0.51
90_Y 33_T 1.29 0.51
156_T 79_Y 1.28 0.49
82_A 22_L 1.27 0.49
187_M 152_G 1.25 0.47
33_S 144_H 1.23 0.44
56_I 17_A 1.22 0.43
113_G 168_D 1.20 0.41
197_G 109_G 1.19 0.41
74_M 19_S 1.19 0.40
54_L 89_A 1.19 0.40
96_Q 41_Q 1.18 0.39
188_L 178_R 1.14 0.35
56_I 25_A 1.11 0.32
189_P 134_I 1.09 0.31
78_S 19_S 1.09 0.30
111_V 45_L 1.09 0.30
111_V 171_T 1.08 0.29
37_N 102_G 1.07 0.29
23_L 168_D 1.07 0.28
158_F 133_K 1.06 0.28
13_W 145_F 1.06 0.28
53_N 110_A 1.05 0.26
145_L 96_A 1.05 0.26
189_P 178_R 1.04 0.26
90_Y 22_L 1.03 0.25
124_P 148_K 1.03 0.25
102_I 180_V 1.03 0.25
188_L 162_K 1.00 0.23
76_I 124_H 1.00 0.22
79_V 171_T 1.00 0.22
188_L 130_L 0.99 0.22
84_Q 41_Q 0.99 0.21
71_I 45_L 0.99 0.21
101_F 128_P 0.97 0.20
75_I 49_V 0.97 0.20
138_A 45_L 0.97 0.20
88_N 41_Q 0.97 0.20
190_P 128_P 0.96 0.20
135_G 102_G 0.96 0.20
151_I 74_G 0.95 0.19
72_Y 43_K 0.95 0.19
141_A 20_T 0.95 0.18
185_L 24_A 0.94 0.18
144_V 36_E 0.93 0.17
184_L 179_A 0.93 0.17
25_L 100_Y 0.93 0.17
37_N 30_T 0.93 0.17
30_A 118_G 0.93 0.17
184_L 178_R 0.92 0.17
133_S 138_L 0.92 0.16
131_G 38_A 0.91 0.16
67_I 109_G 0.91 0.16
71_I 109_G 0.90 0.15
11_G 100_Y 0.90 0.15
85_M 34_I 0.90 0.15
70_P 12_L 0.90 0.15
38_A 59_L 0.89 0.15
127_S 44_A 0.89 0.15
54_L 56_N 0.89 0.15
12_L 13_A 0.89 0.15
122_K 12_L 0.89 0.14
140_C 112_F 0.88 0.14
129_L 85_D 0.88 0.14
23_L 126_E 0.88 0.14
87_I 11_T 0.88 0.14
152_I 35_A 0.88 0.14
199_M 123_E 0.87 0.14
127_S 14_L 0.87 0.14
13_W 161_K 0.87 0.14
67_I 11_T 0.87 0.13
50_T 42_Q 0.87 0.13
45_T 167_F 0.87 0.13
189_P 13_A 0.86 0.13
39_L 128_P 0.86 0.13
129_L 77_R 0.86 0.13
176_I 116_V 0.86 0.13
168_W 63_C 0.85 0.12
90_Y 116_V 0.85 0.12
27_P 106_L 0.85 0.12
186_A 7_K 0.85 0.12
154_N 170_F 0.85 0.12
141_A 5_I 0.85 0.12
189_P 194_L 0.85 0.12
176_I 14_L 0.85 0.12
44_A 173_A 0.84 0.12
17_S 8_H 0.84 0.12
118_F 84_D 0.84 0.12
151_I 116_V 0.84 0.12
25_L 106_L 0.84 0.12
44_A 99_G 0.84 0.12
21_Q 172_G 0.83 0.12
24_G 26_I 0.83 0.12
118_F 11_T 0.83 0.12
125_A 26_I 0.83 0.12
90_Y 66_V 0.83 0.11
79_V 8_H 0.83 0.11
186_A 172_G 0.83 0.11
188_L 175_I 0.83 0.11
15_N 169_Q 0.83 0.11
124_P 22_L 0.82 0.11
74_M 145_F 0.82 0.11
67_I 26_I 0.82 0.11
64_P 155_D 0.82 0.11
58_T 86_K 0.82 0.11
131_G 191_A 0.82 0.11
170_K 202_P 0.82 0.11
20_V 176_T 0.82 0.11
69_I 45_L 0.82 0.10
99_G 165_G 0.81 0.10
82_A 26_I 0.81 0.10
103_P 34_I 0.81 0.10
79_V 98_D 0.81 0.10
101_F 161_K 0.81 0.10
152_I 186_R 0.81 0.10
53_N 162_K 0.81 0.10
171_V 18_G 0.81 0.10
203_K 124_H 0.81 0.10
199_M 136_L 0.81 0.10
189_P 119_T 0.81 0.10
28_L 15_F 0.81 0.10
56_I 61_Q 0.80 0.10
64_P 7_K 0.80 0.10
196_L 126_E 0.80 0.10
25_L 107_L 0.80 0.10
63_T 186_R 0.80 0.10
54_L 71_L 0.80 0.10
98_L 168_D 0.79 0.10
29_L 127_T 0.79 0.09
146_G 163_D 0.79 0.09
56_I 144_H 0.79 0.09
178_H 98_D 0.79 0.09
148_L 22_L 0.79 0.09
44_A 36_E 0.79 0.09
11_G 179_A 0.78 0.09
184_L 158_W 0.78 0.09
72_Y 194_L 0.78 0.09
207_D 145_F 0.78 0.09
23_L 99_G 0.78 0.09
178_H 85_D 0.78 0.09
88_N 38_A 0.78 0.09
58_T 77_R 0.78 0.09
147_S 26_I 0.78 0.09
76_I 16_A 0.78 0.09
170_K 197_Q 0.78 0.09
189_P 132_D 0.78 0.09
46_T 174_T 0.77 0.09
94_L 89_A 0.77 0.09
67_I 183_A 0.77 0.09
103_P 109_G 0.77 0.08
90_Y 119_T 0.77 0.08
17_S 7_K 0.77 0.08
45_T 161_K 0.77 0.08
102_I 121_V 0.77 0.08
17_S 195_P 0.77 0.08
78_S 15_F 0.77 0.08
128_A 82_K 0.77 0.08
189_P 174_T 0.76 0.08
22_L 96_A 0.76 0.08
160_G 37_Q 0.76 0.08
214_R 10_I 0.76 0.08
112_V 33_T 0.76 0.08
67_I 162_K 0.76 0.08
184_L 104_I 0.76 0.08
56_I 111_D 0.76 0.08
60_R 7_K 0.76 0.08
92_F 30_T 0.76 0.08
63_T 15_F 0.76 0.08
70_P 100_Y 0.76 0.08
27_P 126_E 0.75 0.08
27_P 100_Y 0.75 0.08
17_S 199_S 0.75 0.08
79_V 162_K 0.75 0.08
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0437 seconds.