GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
HCAF - YFAE
UniProt: Q47140 - P0ABW3
Length: 256
Sequences: 217
Seq/Len: 0.89
I_Prob: 0.01

HCAF - 3-phenylpropionate/cinnamic acid dioxygenase subunit beta
Paralog alert: 0.28 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: HCAF
YFAE - Uncharacterized ferredoxin-like protein YfaE
Paralog alert: 0.79 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: YFAE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
100_S 62_A 1.47 0.01
34_A 14_L 1.45 0.01
106_E 19_H 1.30 0.00
27_W 22_L 1.29 0.00
102_C 51_A 1.29 0.00
111_N 66_P 1.28 0.00
93_S 41_Y 1.25 0.00
39_E 67_G 1.22 0.00
111_N 51_A 1.17 0.00
53_R 65_Q 1.15 0.00
131_T 14_L 1.13 0.00
27_W 23_L 1.10 0.00
92_P 35_Y 1.07 0.00
82_E 33_V 1.06 0.00
30_R 24_A 1.06 0.00
115_V 12_Q 1.05 0.00
127_E 19_H 1.03 0.00
107_T 82_I 1.03 0.00
42_Y 23_L 1.03 0.00
104_I 27_E 1.02 0.00
130_E 4_V 1.02 0.00
133_Y 60_P 1.02 0.00
160_Q 75_R 1.01 0.00
97_H 36_Q 1.00 0.00
23_L 3_R 1.00 0.00
86_A 23_L 0.99 0.00
148_N 51_A 0.98 0.00
16_F 64_I 0.98 0.00
13_I 17_D 0.98 0.00
156_I 31_V 0.97 0.00
104_I 48_R 0.96 0.00
38_E 51_A 0.96 0.00
37_D 23_L 0.96 0.00
67_F 44_S 0.95 0.00
111_N 3_R 0.95 0.00
29_F 26_L 0.93 0.00
124_A 16_Q 0.93 0.00
31_D 65_Q 0.92 0.00
12_R 14_L 0.92 0.00
115_V 51_A 0.92 0.00
44_M 11_T 0.91 0.00
67_F 76_A 0.91 0.00
108_D 51_A 0.91 0.00
147_D 17_D 0.90 0.00
167_N 70_L 0.90 0.00
112_V 14_L 0.90 0.00
12_R 24_A 0.90 0.00
87_W 41_Y 0.89 0.00
152_L 53_Q 0.89 0.00
22_S 28_S 0.89 0.00
40_I 75_R 0.89 0.00
88_A 16_Q 0.88 0.00
144_L 61_L 0.88 0.00
12_R 53_Q 0.87 0.00
90_E 41_Y 0.87 0.00
69_D 77_K 0.87 0.00
92_P 46_R 0.87 0.00
146_D 75_R 0.87 0.00
35_Q 17_D 0.87 0.00
20_E 63_F 0.86 0.00
15_Q 3_R 0.86 0.00
147_D 62_A 0.86 0.00
14_S 51_A 0.86 0.00
160_Q 33_V 0.85 0.00
64_T 36_Q 0.85 0.00
65_W 24_A 0.85 0.00
13_I 82_I 0.85 0.00
16_F 29_H 0.84 0.00
164_T 22_L 0.84 0.00
35_Q 18_E 0.84 0.00
29_F 47_T 0.83 0.00
37_D 83_E 0.83 0.00
148_N 17_D 0.83 0.00
13_I 18_E 0.83 0.00
151_L 4_V 0.83 0.00
28_K 33_V 0.83 0.00
23_L 18_E 0.82 0.00
105_S 51_A 0.82 0.00
15_Q 16_Q 0.82 0.00
11_H 51_A 0.82 0.00
12_R 19_H 0.82 0.00
154_R 63_F 0.82 0.00
150_R 77_K 0.81 0.00
9_L 8_I 0.81 0.00
30_R 31_V 0.81 0.00
45_R 63_F 0.81 0.00
37_D 18_E 0.81 0.00
72_D 22_L 0.81 0.00
107_T 17_D 0.81 0.00
112_V 66_P 0.80 0.00
31_D 19_H 0.80 0.00
42_Y 3_R 0.80 0.00
77_R 26_L 0.80 0.00
66_I 29_H 0.80 0.00
70_T 65_Q 0.79 0.00
83_T 8_I 0.79 0.00
12_R 77_K 0.79 0.00
150_R 14_L 0.79 0.00
141_V 61_L 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0253 seconds.