GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
d160_H2AX-N-Term

Genes: A B A+B
Length: 177 111 280
Sequences: 263 710 16
Seq/Len: 1.49 6.4 0.06
MirrorTree (Pazo et al. 2001) -0.09
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.09 0.09 0.00
2 0.11 0.10 0.00
5 0.11 0.11 0.00
10 0.11 0.12 0.00
20 0.12 0.12 0.00
100 0.12 0.14 0.02
0.14 0.17 0.06
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.06 < 0.6).

ID Seq/Len Name Options I_Prob Status
6797 0.06 d160_H2AX-N-Term Δgene:(1, ∞) A:(1E-10, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
6796 0 d160_H2AX-N-Term Δgene:(1, 20) A:(1E-10, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared

Page generated in 0.0639 seconds.