GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
glaexosite

Genes: A B A+B
Length: 35 86 104
Sequences: 397 1711 13
Seq/Len: 11.34 19.9 0.12
MirrorTree (Pazo et al. 2001) 0.14
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.10 0.11 0.01
2 0.11 0.13 0.01
5 0.11 0.14 0.02
10 0.12 0.14 0.04
20 0.13 0.14 0.07
100 0.16 0.15 0.07
0.16 0.18 0.11
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.12 < 0.6).

Page generated in 0.0287 seconds.