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LeuT BetP (3tt1, 4doj)

Genes: A B A+B
Length: 498 526 921
Sequences: 3383 2505 32
Seq/Len: 6.79 4.76 0.03
MirrorTree (Pazo et al. 2001) 0.27
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.09 0.04 0.00
2 0.09 0.04 0.00
5 0.10 0.05 0.01
10 0.10 0.05 0.02
20 0.10 0.06 0.03
100 0.12 0.08 0.15
0.18 0.15 0.48
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.03 < 0.6).

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