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DNAN_DPO3B_BACSU-DINB1_DPO41_BACSU HHBlits

Genes: A B A+B
Length: 378 414 754
Sequences: 2691 6745 22
Seq/Len: 7.12 16.29 0.03
MirrorTree (Pazo et al. 2001) 0.11
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.01 0.02 0.00
2 0.01 0.02 0.00
5 0.01 0.02 0.01
10 0.01 0.03 0.01
20 0.01 0.03 0.03
100 0.01 0.04 0.18
0.02 0.14 1.81
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.03 < 0.6).

ID Seq/Len Name Options I_Prob Status
7086 1.88 DNAN_DPO3B_BACSU-DINB1_DPO41_BACSU HHBlits Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) 0.00 Done - Shared
7082 3.81 DNAN_DPO3B_BACSU-DINB1_DPO41_BACSU Jackhammer Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) 0.00 Done - Shared
6934 0.03 DNAN_DPO3B_BACSU-DINB1_DPO41_BACSU HHBlits Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
6894 0.1 DNAN_DPO3B_BACSU-DINB1_DPO41_BACSU Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) 0.00 Done - Shared

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