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1IRA_YX OR 1G0Y_R Interleukin-1 receptor 1ILR_1 Interleukin-1 receptor antagonist protein

Genes: A B A+B
Length: 312 152 464
Sequences: 6752 238 1
Seq/Len: 21.64 1.57 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.14 0.57 0.00
2 0.16 0.57 0.00
5 0.19 0.57 0.00
10 0.20 0.57 0.00
20 0.21 0.57 0.00
100 0.24 0.57 0.01
0.26 0.57 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence B, there is a high ratio (0.57 > 0.4) of paralogs.

ID Seq/Len Name Options I_Prob Status
6971 0 1IRA_YX OR 1G0Y_R Interleukin-1 receptor 1ILR_1 Interleukin-1 receptor antagonist protein Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
4104 0 1G0Y_R Interleukin-1 receptor 1ILR_1 Interleukin-1 receptor antagonist protein Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) Killed - Shared

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