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1RKE_AB OX 1SYQ_A Vinculin head 3MYI_A

Genes: A B A+B
Length: 264 172 424
Sequences: 156 140 11
Seq/Len: 0.59 0.81 0.03
MirrorTree (Pazo et al. 2001) 0.95
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.06 0.02
2 0.07 0.07 0.03
5 0.07 0.07 0.03
10 0.07 0.07 0.03
20 0.07 0.07 0.03
100 0.08 0.08 0.03
0.08 0.08 0.03
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.03 < 0.6).

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