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PcrA_LigA

Genes: A B A+B
Length: 739 668 1284
Sequences: 3698 3365 149
Seq/Len: 5 5.04 0.12
MirrorTree (Pazo et al. 2001) 0.51
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.09 0.09 0.06
2 0.09 0.09 0.07
5 0.09 0.09 0.08
10 0.09 0.09 0.09
20 0.09 0.09 0.11
100 0.10 0.09 0.22
0.16 0.12 0.94
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • Analysis in progress...

ID Seq/Len Name Options I_Prob Status
6989 0.12 PcrA_LigA Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Running - Shared
6988 0.09 PcrA_LigA Δgene:(1, 5) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Running - Shared

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