GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
B-cardiac myosin vs cMyBP-C_2 (B, 380-970)

Genes: A B A+B
Length: 960 591 1493
Sequences: 1427 1835 57
Seq/Len: 1.49 3.1 0.04
MirrorTree (Pazo et al. 2001) 0.06
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.10 0.00
2 0.06 0.12 0.00
5 0.06 0.13 0.00
10 0.06 0.13 0.00
20 0.07 0.14 0.01
100 0.07 0.16 0.01
0.11 0.20 0.04
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.04 < 0.6).

Page generated in 0.0194 seconds.