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B-cardiac myosin vs cMyBP-C_2 (B, 380-970) (A, 1-800) (B, 1-580)

Genes: A B A+B
Length: 800 580 1343
Sequences: 2708 1937 107
Seq/Len: 3.38 3.34 0.08
MirrorTree (Pazo et al. 2001) 0.11
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.10 0.00
2 0.06 0.12 0.00
5 0.06 0.13 0.00
10 0.06 0.13 0.01
20 0.07 0.15 0.01
100 0.09 0.16 0.04
0.12 0.21 0.08
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • Analysis in progress...

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