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4qt8_A_C

Genes: A B A+B
Length: 669 253 839
Sequences: 141 12672 9
Seq/Len: 0.21 50.09 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.32 0.18 0.00
2 0.33 0.19 0.00
5 0.33 0.21 0.00
10 0.33 0.22 0.01
20 0.33 0.23 0.01
100 0.34 0.25 0.01
0.36 0.28 0.02
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

ID Seq/Len Name Options I_Prob Status
7363 0.01 4qt8_A_C Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
0291 0.01 T0840 - T0841 Δgene:(1, 20) A:(1E-04, 4) B:(1E-20, 8) msa: HHblits (2013_03) Killed
0290 0.01 T0840 - T0841 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2013_03) Killed - Shared

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