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RB1900-2000 Cyc1450-1700

Genes: A B A+B
Length: 43 75 118
Sequences: 3 1247 1
Seq/Len: 0.07 16.63 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.00 0.15 0.01
2 0.00 0.15 0.01
5 0.00 0.15 0.01
10 0.00 0.15 0.01
20 0.00 0.15 0.01
100 0.00 0.16 0.02
0.00 0.20 0.02
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

ID Seq/Len Name Options I_Prob Status
7382 0.01 RB1900-2000 Cyc1450-1700 Δgene:(1, 20) A:(1E-02, 8) B:(1E-06, 8) msa: HHblits (2015_06) Killed - Shared
7379 0.01 RB1900-2000 Cyc1450-1700 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
7378 0.01 RB1900-2100 Cyclin Δgene:(1, 20) A:(1E-04, 8) B:(1E-06, 8) msa: HHblits (2015_06) Killed - Shared
7377 0.01 RB1900-2100 Cyclin Δgene:(1, 20) A:(1E-06, 8) B:(1E-06, 8) msa: HHblits (2015_06) Killed - Shared

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