GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
sar-myd

Genes: A B A+B
Length: 300 146 441
Sequences: 62 1212 5
Seq/Len: 0.21 8.3 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.17 0.00
2 0.06 0.18 0.00
5 0.06 0.20 0.00
10 0.06 0.23 0.00
20 0.06 0.24 0.00
100 0.06 0.25 0.00
0.06 0.26 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

ID Seq/Len Name Options I_Prob Status
7528 0.26 sar-myd Δgene:(1, ∞) A:(1E-04, 8) B:(1E-02, 8) msa: HHblits (2015_06) 0.00 Done - Shared
7527 0.28 sar-myd Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) 0.00 Done - Shared
7526 0.01 sar-myd Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared

Page generated in 0.0203 seconds.