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1DFJ

Genes: A B A+B
Length: 456 150 606
Sequences: 3303 520 3
Seq/Len: 7.24 3.47 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.05 0.59 0.00
2 0.06 0.65 0.00
5 0.06 0.67 0.00
10 0.07 0.67 0.00
20 0.08 0.69 0.00
100 0.09 0.69 0.01
0.15 0.69 0.01
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence B, there is a high ratio (0.69 > 0.4) of paralogs.

ID Seq/Len Name Options I_Prob Status
7569 0 1DFJ Δgene:(1, 20) A:(1E-06, 4) B:(1E-06, 4) msa: HHblits (2015_06) Killed - Shared
5783 0 1DFJ Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared

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