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DI1200007_2N01

Genes: A B A+B
Length: 30 106 132
Sequences: 56 1511 49
Seq/Len: 1.87 14.25 0.37
MirrorTree (Pazo et al. 2001) 0.82
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.01 0.00 0.07
2 0.01 0.00 0.37
5 0.01 0.00 0.36
10 0.01 0.00 0.36
20 0.02 0.01 0.36
100 0.02 0.02 0.36
0.02 0.04 0.36
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.37 < 0.6).

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