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DUF

Genes: A B A+B
Length: 158 153 300
Sequences: 708 2613 7
Seq/Len: 4.48 17.08 0.02
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.00 0.00 0.00
2 0.00 0.00 0.01
5 0.00 0.00 0.01
10 0.00 0.01 0.01
20 0.00 0.01 0.02
100 0.00 0.04 0.07
0.00 0.14 0.24
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.02 < 0.6).

ID Seq/Len Name Options I_Prob Status
7836 1.23 du Δgene:(0, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) 0.01 Done
7832 0.67 du Δgene:(0, 0) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) 0.00 Done
7831 0 DUF Δgene:(1, 1) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2015_06) Killed - Shared
7829 0.02 DUF Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared

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