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S2SLF1_S3RNase_10

Genes: A B A+B
Length: 330 222 513
Sequences: 404 784 11
Seq/Len: 1.22 3.53 0.02
MirrorTree (Pazo et al. 2001) 0.87
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.12 0.03 0.01
2 0.13 0.03 0.01
5 0.16 0.04 0.02
10 0.17 0.04 0.02
20 0.17 0.04 0.02
100 0.19 0.04 0.02
0.24 0.05 0.06
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.02 < 0.6).

ID Seq/Len Name Options I_Prob Status
7846 0.13 S2SLF1_S3RNase_10JH Δgene:(1, 100) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (r132) 0.00 Done - Shared
7845 0.02 S2SLF1_S3RNase_10 Δgene:(1, 100) A:(1E-10, 8) B:(1E-10, 8) msa: HHblits (2015_06) Killed - Shared

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