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MFD_THETH_319-398-RPOB_THETH_17_392

Genes: A B A+B
Length: 79 182 240
Sequences: 4463 6630 36
Seq/Len: 56.49 36.43 0.15
MirrorTree (Pazo et al. 2001) 0.42
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.00 0.98 0.01
2 0.00 0.98 0.02
5 0.00 0.98 0.03
10 0.00 0.98 0.05
20 0.00 0.98 0.14
100 0.00 0.98 0.91
0.00 0.98 4.48
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.15 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence B, there is a high ratio (0.98 > 0.4) of paralogs.

ID Seq/Len Name Options I_Prob Status
7859 0.15 MFD_THETH_319-398-RPOB_THETH_17_392 Δgene:(1, 20) A:(1E-06, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared
7857 4.86 MFD_THETH_319-398-RPOB_THETH_17_392 Δgene:(1, ∞) A:(1E-06, 8) B:(1E-20, 8) msa: Jackhmmer (r132) 0.97 Done - Shared

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