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MnxE vs MnxF

Genes: A B A+B
Length: 116 102 206
Sequences: 15 12 12
Seq/Len: 0.13 0.12 0.06
MirrorTree (Pazo et al. 2001) 0.65
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.94 0.00 0.06
2 0.94 0.00 0.06
5 0.94 0.00 0.06
10 0.94 0.00 0.06
20 0.94 0.00 0.06
100 0.94 0.00 0.06
0.94 0.00 0.06
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.06 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (0.94 > 0.4) of paralogs.

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