GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
pred_1EZU_l_u_BpdbBfas_1EZU_r_u_ApdbAfastable_PRtxt

Genes: A B A+B
Length: 142 223 365
Sequences: 232 13968 1
Seq/Len: 1.63 62.64 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.19 0.00
2 0.06 0.20 0.00
5 0.06 0.22 0.00
10 0.06 0.23 0.00
20 0.06 0.24 0.00
100 0.06 0.26 0.00
0.06 0.29 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).

Page generated in 0.0214 seconds.