GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
pred_2BTF_l_u_XpdbXfas_2BTF_r_u_BpdbBfastable_PRtxt

Genes: A B A+B
Length: 139 371 495
Sequences: 621 3055 13
Seq/Len: 4.47 8.23 0.03
MirrorTree (Pazo et al. 2001) 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.04 0.01
2 0.07 0.05 0.01
5 0.07 0.05 0.01
10 0.07 0.05 0.01
20 0.07 0.06 0.03
100 0.07 0.08 0.09
0.07 0.16 0.27
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.03 < 0.6).

Page generated in 0.0371 seconds.