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CyclinD1 v p107 Jackhmmer (B, 320-466)

Genes: A B A+B
Length: 295 147 442
Sequences: 2641 102 2
Seq/Len: 8.95 0.69 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.10 0.10 0.00
2 0.10 0.10 0.00
5 0.11 0.10 0.00
10 0.11 0.10 0.00
20 0.11 0.10 0.00
100 0.13 0.10 0.02
0.18 0.10 0.08
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).

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