GREMLIN.BAKERLAB.org
Powered by OPENSEQ.org
HsapCycD1 v Hsapp107 (A, 1-270) (B, 700-917) (B, 100-218) (A, 25-260) (B, 10-119) (B, 70-110)

Genes: A B A+B
Length: 236 41 277
Sequences: 3963 22 4
Seq/Len: 16.79 0.54 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.08 0.00 0.00
2 0.09 0.00 0.00
5 0.09 0.00 0.00
10 0.09 0.00 0.00
20 0.10 0.00 0.00
100 0.13 0.00 0.00
0.19 0.00 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

Page generated in 0.0613 seconds.