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CYOD - Cytochrome o ubiquinol oxidase protein CyoD
UniProt: P0ABJ6 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10181
Length: 109 (109)
Sequences: 346
Seq/Len: 3.17

CYOD
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
15_V 19_M 2.891 1.00
71_K 75_G 2.224 1.00
87_I 91_L 1.892 0.99
90_I 94_G 1.765 0.99
83_F 87_I 1.741 0.99
23_I 27_I 1.738 0.99
94_G 101_N 1.648 0.98
58_V 61_H 1.621 0.98
60_V 106_M 1.574 0.97
32_P 50_I 1.544 0.97
94_G 99_M 1.531 0.97
13_G 17_T 1.531 0.97
51_L 92_V 1.52 0.96
101_N 105_N 1.496 0.96
90_I 93_V 1.477 0.96
72_S 80_A 1.462 0.95
31_I 49_T 1.416 0.94
62_L 98_I 1.41 0.94
85_V 89_A 1.406 0.94
19_M 23_I 1.384 0.93
23_I 30_V 1.355 0.92
103_N 108_M 1.295 0.90
17_T 64_C 1.281 0.89
87_I 92_V 1.273 0.89
41_A 46_I 1.26 0.88
94_G 102_L 1.26 0.88
43_P 50_I 1.251 0.87
30_V 34_W 1.241 0.87
10_A 50_I 1.231 0.86
13_G 25_S 1.231 0.86
68_M 84_T 1.229 0.86
102_L 105_N 1.224 0.86
22_F 56_V 1.215 0.85
25_S 61_H 1.204 0.85
73_D 92_V 1.175 0.83
48_G 52_A 1.171 0.82
76_W 90_I 1.158 0.81
33_F 60_V 1.155 0.81
75_G 78_M 1.154 0.81
51_L 95_S 1.153 0.81
20_T 23_I 1.151 0.81
16_K 95_S 1.117 0.78
78_M 86_L 1.108 0.77
55_V 92_V 1.089 0.76
61_H 66_L 1.088 0.75
82_V 86_L 1.076 0.74
25_S 34_W 1.064 0.73
95_S 100_W 1.034 0.70
54_A 98_I 1.033 0.70
4_S 7_H 1.03 0.70
10_A 16_K 1.029 0.69
50_I 95_S 1.022 0.69
75_G 101_N 1.018 0.68
20_T 27_I 1.01 0.67
2_S 5_T 1.006 0.67
34_W 74_E 1.003 0.67
90_I 101_N 1.001 0.66
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2bg9A20.92666.80.936Contact Map0.266
2bg9E10.93585.10.94Contact Map0.124
2bg9C10.926650.94Contact Map0.164
2bg9B10.93582.90.946Contact Map0.236
3ne5A10.44042.30.95Contact Map0.157
3j1zP20.91741.80.952Contact Map0.158
2ksrA10.89911.40.955Contact Map0.104
4g1uA20.83491.40.955Contact Map0.15
4dx5A30.33031.30.956Contact Map0.183
3w9iA60.33031.30.956Contact Map0.228

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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