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BFD - Bacterioferritin-associated ferredoxin
UniProt: P0AE56 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11181
Length: 64 (63)
Sequences: 268
Seq/Len: 4.25

BFD
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
29_L 50_M 2.645 1.00
2_Y 5_L 1.75 0.99
11_D 14_I 1.74 0.99
10_S 13_K 1.731 0.99
2_Y 8_G 1.719 0.99
1_M 4_C 1.692 0.99
36_G 43_V 1.613 0.99
23_P 29_L 1.46 0.97
59_E 62_E 1.404 0.96
29_L 35_V 1.402 0.96
18_V 44_R 1.399 0.96
38_Q 41_K 1.385 0.96
26_F 29_L 1.382 0.96
9_I 33_I 1.358 0.95
18_V 50_M 1.356 0.95
26_F 50_M 1.33 0.95
7_N 27_Q 1.308 0.94
18_V 54_L 1.282 0.93
58_P 61_K 1.279 0.93
30_K 41_K 1.269 0.93
17_A 20_Q 1.225 0.91
26_F 36_G 1.193 0.90
16_Q 45_A 1.186 0.89
14_I 36_G 1.175 0.89
17_A 22_S 1.174 0.88
14_I 46_A 1.15 0.87
43_V 47_R 1.122 0.85
28_Q 46_A 1.103 0.84
11_D 15_R 1.06 0.80
19_R 53_E 1.057 0.80
2_Y 10_S 1.042 0.79
46_A 49_V 1.022 0.77
10_S 33_I 1.011 0.76
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4e6kG30.984499.40.375Contact Map0.657
2hu9A20.781298.60.55Contact Map0.457
2gagA10.9844980.619Contact Map0.524
1y56A10.968896.80.692Contact Map0.507
2qcuA20.953160.90.831Contact Map0.39
3da1A1159.80.832Contact Map0.352
1cttA10.79698.70.891Contact Map0.139
3o2kA10.85945.90.899Contact Map0.247
2rghA115.80.9Contact Map0.506
3zyvA40.90623.90.907Contact Map0.228

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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