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ARFA - Alternative ribosome-rescue factor A
UniProt: P36675 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11968
Length: 72 (69)
Sequences: 74
Seq/Len: 1.07

ARFA
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
62_F 65_G 2.13 0.98
21_H 27_Q 1.778 0.91
2_S 10_Q 1.758 0.91
16_I 43_G 1.714 0.89
12_K 33_K 1.702 0.89
47_N 51_W 1.575 0.83
43_G 50_N 1.49 0.78
14_N 33_K 1.483 0.77
5_Q 66_L 1.385 0.70
10_Q 48_R 1.378 0.70
44_K 52_E 1.345 0.67
40_M 43_G 1.287 0.62
32_N 55_G 1.286 0.62
4_Y 52_E 1.279 0.61
4_Y 22_D 1.262 0.60
12_K 61_F 1.237 0.57
17_E 20_L 1.233 0.57
16_I 49_G 1.226 0.56
16_I 48_R 1.192 0.53
6_H 19_L 1.169 0.51
31_K 40_M 1.159 0.50
22_D 52_E 1.149 0.49
29_V 46_G 1.124 0.47
23_P 44_K 1.112 0.46
8_K 31_K 1.09 0.44
64_T 67_L 1.09 0.44
2_S 33_K 1.077 0.42
8_K 46_G 1.072 0.42
2_S 29_V 1.067 0.42
55_G 60_H 1.062 0.41
3_R 10_Q 1.06 0.41
6_H 52_E 1.048 0.40
46_G 61_F 1.041 0.39
14_N 42_K 1.04 0.39
11_I 23_P 1.026 0.38
1_M 54_S 1.012 0.37
11_I 45_H 1.009 0.36
4_Y 44_K 1.001 0.36
26_R 31_K 1 0.36
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2q8kA10.7514.80.919Contact Map0.212
4ipaA40.73618.10.928Contact Map0.209
3jtnA20.33335.60.934Contact Map0.384
1ekrA10.51395.20.934Contact Map0.01
2qguA10.53.80.938Contact Map0.259
1baxA10.33333.60.94Contact Map0.011
4kisA40.80563.30.941Contact Map0
2wmfA10.81943.20.941Contact Map0.267
2yx6A40.44442.70.943Contact Map0.155
4bqqA20.73612.70.943Contact Map0

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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