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FLIJ - Flagellar FliJ protein
UniProt: P52613 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG20267
Length: 147 (146)
Sequences: 323
Seq/Len: 2.21

FLIJ
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
116_E 120_T 2.262 1.00
46_Q 77_E 2.232 1.00
18_V 108_L 2.046 0.99
28_M 97_A 1.923 0.99
37_E 99_N 1.768 0.98
83_H 87_L 1.611 0.95
49_Y 101_W 1.538 0.94
3_E 6_A 1.53 0.93
21_A 25_L 1.525 0.93
7_L 114_L 1.378 0.88
10_L 68_N 1.351 0.86
2_A 145_K 1.337 0.85
11_K 115_Q 1.334 0.85
32_C 116_E 1.333 0.85
42_L 79_A 1.329 0.85
32_C 94_V 1.325 0.85
43_I 73_I 1.299 0.83
73_I 89_Q 1.299 0.83
132_K 137_F 1.292 0.83
31_G 34_Q 1.277 0.82
29_R 69_Y 1.27 0.81
10_L 19_E 1.268 0.81
107_R 139_Q 1.265 0.81
48_E 84_R 1.264 0.81
88_N 92_Q 1.259 0.80
132_K 136_E 1.259 0.80
73_I 130_D 1.246 0.79
26_G 73_I 1.224 0.78
69_Y 77_E 1.223 0.77
81_T 120_T 1.204 0.76
70_Q 140_R 1.203 0.76
101_W 105_K 1.196 0.75
41_M 68_N 1.194 0.75
33_Q 99_N 1.194 0.75
46_Q 130_D 1.193 0.75
109_Q 112_Q 1.191 0.75
28_M 138_A 1.183 0.74
85_Q 88_N 1.183 0.74
10_L 114_L 1.168 0.73
59_A 99_N 1.165 0.73
76_L 110_A 1.161 0.72
12_D 16_K 1.155 0.72
5_G 115_Q 1.15 0.71
10_L 111_W 1.146 0.71
27_E 30_R 1.146 0.71
63_S 66_W 1.145 0.71
14_A 72_F 1.142 0.70
46_Q 49_Y 1.139 0.70
80_I 130_D 1.134 0.70
106_Q 110_A 1.133 0.69
17_E 114_L 1.126 0.69
68_N 140_R 1.107 0.67
39_L 80_I 1.09 0.65
10_L 113_T 1.083 0.64
45_Y 68_N 1.081 0.64
19_E 105_K 1.08 0.64
11_K 83_H 1.078 0.64
2_A 126_E 1.068 0.63
57_M 60_G 1.066 0.63
94_V 109_Q 1.065 0.63
95_D 99_N 1.064 0.62
112_Q 116_E 1.059 0.62
32_C 87_L 1.053 0.61
75_T 118_Q 1.051 0.61
88_N 91_T 1.045 0.60
29_R 98_L 1.035 0.59
45_Y 72_F 1.03 0.59
40_K 88_N 1.029 0.59
98_L 129_L 1.028 0.58
24_L 112_Q 1.023 0.58
49_Y 72_F 1.022 0.58
38_Q 75_T 1.021 0.58
44_D 114_L 1.017 0.57
129_L 133_K 1.017 0.57
45_Y 128_R 1.013 0.57
97_A 106_Q 1.005 0.56
52_N 56_D 1.004 0.56
87_L 90_W 1.001 0.55
1_M 33_Q 1 0.55
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3ajwA111000.194Contact Map0.354
3k29A10.993299.90.349Contact Map0.334
4mh6A10.972896.20.796Contact Map0.262
4dndA10.585100.921Contact Map0.29
3si5X20.16333.80.935Contact Map0.207
3nr7A20.44223.40.936Contact Map0.517
1i84S20.87762.50.94Contact Map
3tnuA10.78912.30.942Contact Map0.249
1t3jA10.34692.20.942Contact Map0.499
3mq9A80.61222.20.942Contact Map0.262

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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