GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Chitin_bind_4 - Insect cuticle protein
Pfam: PF00379 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 52
Sequences: 1653
Seq/Len: 31.79
HH_delta: 0.807 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
35_D41_R1.048193.064
31_Y43_V0.931622.724
30_S44_T0.924582.703
35_D39_Q0.898142.626
34_I40_T0.756462.211
32_S42_T0.730672.136
1_Y14_E0.603231.763
26_V48_D0.563821.648
3_F12_R0.557581.630
46_V50_N0.485221.419
8_S14_E0.480291.404
20_T23_E0.450731.318
30_S42_T0.442551.294
6_E11_S0.435491.273
27_V45_Y0.434241.269
5_Y12_R0.430021.257
1_Y27_V0.422611.235
33_Y41_R0.408131.193
43_V52_F0.405691.186
7_T33_Y0.396191.158
13_Q16_G0.393511.150
17_R26_V0.37241.089
19_E22_D0.369481.080
31_Y45_Y0.348841.020
6_E34_I0.345681.011
45_Y52_F0.343131.003
28_R46_V0.334960.979
11_S32_S0.33450.978
3_F45_Y0.319480.934
37_D41_R0.310190.907
33_Y36_P0.308170.901
12_R45_Y0.3060.895
35_D40_T0.301140.880
19_E23_E0.299330.875
32_S40_T0.296310.866
2_S21_E0.288830.844
3_F27_V0.28770.841
12_R17_R0.271750.794
19_E30_S0.269410.788
22_D25_G0.268840.786
10_G49_E0.255910.748
15_E28_R0.254920.745
23_E39_Q0.252750.739
5_Y52_F0.251380.735
9_D38_G0.249840.730
19_E25_G0.248360.726
47_A50_N0.247680.724
12_R16_G0.238580.697
31_Y52_F0.235390.688
16_G32_S0.234430.685
16_G49_E0.234010.684
26_V46_V0.233590.683
38_G52_F0.227670.666
25_G49_E0.22670.663
33_Y52_F0.221270.647
6_E10_G0.220670.645
33_Y39_Q0.216590.633
7_T13_Q0.215270.629
20_T24_G0.214350.627
5_Y33_Y0.214120.626
3_F28_R0.212940.623
19_E24_G0.21070.616
26_V49_E0.210410.615
46_V49_E0.210390.615
10_G34_I0.208750.610
36_P39_Q0.208460.609
47_A51_G0.208070.608
13_Q30_S0.207180.606
2_S7_T0.206240.603
13_Q17_R0.203020.594
33_Y37_D0.201620.589
4_G34_I0.200230.585
23_E46_V0.199940.585
38_G51_G0.199010.582
2_S40_T0.198620.581
29_G51_G0.194740.569
15_E21_E0.190130.556
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2kt7A0.346217.70.807
1twuA0.9808100.826
1rypE0.48085.80.843
1rypG0.557750.847
3oajA0.961550.848
2g5dA0.98084.90.848
3e5dA0.86544.50.851
1rypC0.57694.30.852
1rypF0.57694.10.853
4eo3A0.92314.10.854
If you are interested in a protein containing this domain,
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