GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
ATP-synt_8 - ATP synthase protein 8
Pfam: PF00895 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0255
Length: 54
Sequences: 2481
Seq/Len: 45.94
HH_delta: 0.815 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
38_S41_T0.50771.896
4_L17_W0.497771.859
15_F19_I0.440191.644
18_L26_L0.431241.611
18_L22_I0.39431.473
50_W53_P0.385821.441
34_P38_S0.375021.401
25_I28_Y0.346151.293
33_P43_K0.336581.257
34_P44_K0.333631.246
6_P9_W0.333571.246
12_L16_F0.329171.229
11_F15_F0.325881.217
36_S39_K0.320071.195
39_K42_K0.31751.186
8_P17_W0.313371.170
39_K45_K0.310381.159
4_L28_Y0.310031.158
38_S43_K0.308211.151
20_L27_I0.30091.124
20_L25_I0.296391.107
33_P42_K0.292521.093
46_K52_W0.290561.085
14_L36_S0.2881.076
4_L29_F0.282351.055
37_P51_N0.274851.027
10_F28_Y0.274691.026
17_W52_W0.273511.022
34_P46_K0.273221.020
32_T40_K0.26280.982
4_L50_W0.258740.966
5_N8_P0.258420.965
32_T46_K0.256920.960
7_M33_P0.25680.959
34_P37_P0.252310.942
44_K49_P0.252010.941
38_S44_K0.251530.939
40_K47_T0.250380.935
13_F17_W0.249520.932
2_P9_W0.248390.928
27_I31_K0.246430.920
44_K48_N0.245850.918
15_F24_M0.244130.912
42_K46_K0.243680.910
3_Q25_I0.243460.909
6_P12_L0.243410.909
8_P11_F0.24120.901
10_F52_W0.240060.897
39_K51_N0.237850.888
15_F25_I0.237080.885
34_P40_K0.235990.881
36_S42_K0.235370.879
33_P45_K0.234640.876
11_F42_K0.234560.876
23_I53_P0.232030.867
19_I22_I0.231280.864
39_K44_K0.230750.862
33_P38_S0.229330.857
40_K43_K0.226740.847
17_W53_P0.225650.843
30_F40_K0.224690.839
17_W21_L0.222690.832
26_L45_K0.218740.817
4_L8_P0.218680.817
40_K45_K0.216980.810
5_N12_L0.216840.810
4_L9_W0.215530.805
38_S45_K0.214530.801
3_Q9_W0.213060.796
17_W35_N0.212940.795
8_P13_F0.2090.781
16_F28_Y0.207940.777
25_I31_K0.205070.766
24_M32_T0.20350.760
16_F27_I0.203180.759
36_S41_T0.198920.743
10_F17_W0.198620.742
7_M11_F0.196850.735
26_L29_F0.196690.735
12_L27_I0.196410.734
5_N10_F0.195090.729
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3hb3B170.815
2gsmB160.82
2yevB13.90.834
1fftB11.50.866
3ar4A0.66671.20.872
2rddB0.68520.80.885
4f4lA0.90740.70.889
4gqrA0.38890.60.892
4g63A0.33330.60.894
4f6oA0.33330.60.896
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