GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Bac_export_3 - Bacterial export proteins family 3
Pfam: PF01313 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0315
Length: 76
Sequences: 870
Seq/Len: 11.45
HH_delta: 0.919 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
28_V54_A0.751143.489
24_V54_A0.473442.199
24_V58_V0.470062.183
14_V56_F0.43642.027
34_I38_A0.429451.995
23_L27_V0.42381.968
9_Q76_Q0.41511.928
42_Q72_D0.363061.686
16_M69_Q0.35931.669
38_A42_Q0.348371.618
58_V62_F0.34341.595
13_L17_L0.315431.465
17_L66_M0.315081.463
30_L34_I0.286211.329
30_L35_F0.285791.327
18_S49_V0.272021.263
44_Q47_S0.26761.243
47_S50_P0.267051.240
53_L57_L0.266731.239
67_L71_V0.257161.194
15_L53_L0.25231.172
35_F41_I0.248731.155
11_L56_F0.248431.154
21_V66_M0.245341.139
14_V18_S0.241311.121
13_L69_Q0.239191.111
25_A55_V0.233991.087
43_E46_L0.233061.082
15_L64_P0.229091.064
22_L49_V0.227921.059
26_L50_P0.226051.050
48_F51_K0.224711.044
52_L64_P0.223981.040
9_Q12_W0.221441.028
5_D8_R0.22121.027
13_L73_F0.221061.027
29_G51_K0.219391.019
13_L75_R0.218651.016
12_W42_Q0.212370.986
25_A47_S0.211820.984
71_V75_R0.211020.980
31_V35_F0.208320.968
19_A53_L0.207940.966
38_A63_G0.207740.965
37_A40_Q0.206560.959
12_W57_L0.205010.952
22_L33_S0.204630.950
24_V62_F0.201110.934
68_Q72_D0.200670.932
26_L48_F0.198790.923
44_Q49_V0.197080.915
57_L61_L0.196330.912
48_F65_W0.196150.911
7_L15_L0.194720.904
38_A65_W0.192710.895
7_L11_L0.187410.870
8_R12_W0.18690.868
33_S55_V0.185910.863
29_G48_F0.184620.857
21_V68_Q0.183460.852
41_I45_T0.181460.843
4_I73_F0.180910.840
5_D9_Q0.180280.837
1_E61_L0.178460.829
12_W44_Q0.178420.829
23_L69_Q0.177580.825
55_V70_L0.177020.822
54_A57_L0.175010.813
3_V22_L0.174510.811
39_T43_E0.172780.802
40_Q58_V0.169920.789
20_P24_V0.169480.787
57_L75_R0.168880.784
37_A42_Q0.16840.782
2_Q25_A0.168240.781
17_L65_W0.167540.778
63_G70_L0.165730.770
19_A71_V0.16520.767
9_Q68_Q0.164620.765
1_E5_D0.163610.760
6_L52_L0.163190.758
42_Q51_K0.162830.756
33_S60_L0.16260.755
56_F60_L0.162540.755
43_E48_F0.160960.748
44_Q56_F0.160180.744
10_A56_F0.159640.741
21_V43_E0.159060.739
21_V58_V0.159010.739
14_V44_Q0.158060.734
26_L30_L0.157260.730
23_L53_L0.156550.727
72_D75_R0.156320.726
56_F59_L0.155130.720
14_V22_L0.15510.720
23_L59_L0.155060.720
34_I62_F0.154840.719
17_L69_Q0.153070.711
5_D61_L0.151940.706
26_L49_V0.151010.701
25_A35_F0.150390.698
42_Q46_L0.149360.694
3_V40_Q0.147440.685
32_I49_V0.146830.682
36_Q39_T0.145820.677
17_L73_F0.145520.676
4_I76_Q0.145380.675
25_A45_T0.145220.674
43_E47_S0.144840.673
24_V34_I0.144510.671
32_I66_M0.144290.670
37_A58_V0.143450.666
21_V26_L0.143360.666
43_E50_P0.142970.664
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3tuiA14.60.919
3tijA0.44744.50.92
3orgA0.89473.30.925
4il6R0.36843.20.925
4kppA0.40792.50.929
3rfuA0.92112.20.93
4humA0.93422.10.931
2iwlX0.46051.70.934
3rlfG11.60.936
3mktA0.93421.50.937
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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