GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Pmp3 - Proteolipid membrane potential modulator
Pfam: PF01679 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 51
Sequences: 713
Seq/Len: 13.98
HH_delta: 0.847 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
30_N44_H1.151524.312
5_L20_K0.5892.206
34_T41_G0.534882.003
38_W42_V0.515151.929
16_A45_A0.512461.919
17_V48_V0.477881.790
25_K29_I0.476781.785
6_I46_L0.464611.740
9_A49_I0.446961.674
23_C27_F0.418271.566
9_A42_V0.376581.410
3_I50_Y0.352811.321
12_L19_L0.346991.299
26_D29_I0.341141.277
21_K48_V0.336691.261
26_D44_H0.319751.197
12_L15_L0.305551.144
2_D49_I0.300661.126
26_D30_N0.296291.110
2_D5_L0.286711.074
9_A46_L0.279761.048
37_G41_G0.276551.036
2_D20_K0.275881.033
18_F27_F0.268511.005
6_I10_I0.267721.003
12_L18_F0.265860.996
17_V22_G0.255150.955
4_L23_C0.250880.939
46_L50_Y0.241970.906
21_K26_D0.231410.867
14_P32_L0.229260.859
22_G48_V0.222220.832
33_L41_G0.222020.831
5_L16_A0.220410.825
6_I27_F0.219610.822
4_L47_Y0.219550.822
2_D38_W0.218370.818
42_V46_L0.217420.814
12_L27_F0.212010.794
24_S36_L0.21180.793
11_F15_L0.211210.791
24_S32_L0.209820.786
5_L21_K0.209150.783
10_I45_A0.209110.783
9_A16_A0.203760.763
10_I28_W0.202140.757
24_S28_W0.200720.752
9_A45_A0.198860.745
3_I6_I0.193790.726
11_F14_P0.193590.725
19_L34_T0.191890.719
28_W31_L0.191870.718
3_I20_K0.187970.704
20_K24_S0.186240.697
4_L21_K0.179760.673
36_L40_P0.178760.669
20_K34_T0.177540.665
15_L19_L0.17680.662
34_T37_G0.175710.658
7_I39_I0.173290.649
20_K48_V0.171950.644
7_I25_K0.169340.634
20_K42_V0.167540.627
14_P35_L0.164960.618
8_L25_K0.162620.609
22_G44_H0.162460.608
3_I35_L0.161640.605
16_A49_I0.158640.594
26_D31_L0.15850.594
4_L8_L0.158220.592
16_A20_K0.155990.584
20_K49_I0.155640.583
21_K50_Y0.15350.575
43_I50_Y0.151130.566
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4i0uA115.70.847
2iubA114.40.85
4ev6A113.60.851
2ki9A0.62753.90.882
2z73A13.80.883
3pblA13.60.884
1jb0I0.64712.90.889
4eiyA12.80.889
4ea3A12.50.893
3emlA12.50.893
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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