GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
FliE - Flagellar hook-basal body complex protein FliE
Pfam: PF02049 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 96
Sequences: 750
Seq/Len: 7.81
HH_delta: 0.922 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
41_T73_S0.563582.979
90_E93_R0.47112.490
39_N43_Q0.439072.320
59_D62_E0.420892.224
51_A56_E0.385992.040
79_Q82_N0.34881.843
47_Q51_A0.344861.823
38_V77_A0.340831.801
52_F63_V0.314751.663
32_K36_D0.291521.541
33_N36_D0.288621.525
26_S29_D0.280081.480
45_A49_A0.276141.459
41_T69_K0.27321.444
27_F31_L0.26761.414
48_M66_A0.252761.336
74_L78_V0.251471.329
74_L77_A0.249851.320
75_Q79_Q0.243041.284
31_L34_A0.239271.265
73_S78_V0.236331.249
83_K86_E0.232721.230
63_V88_Y0.231161.222
87_A91_I0.221761.172
29_D33_N0.220311.164
89_Q93_R0.214011.131
71_S75_Q0.212261.122
61_H65_I0.211181.116
44_Q47_Q0.208951.104
86_E89_Q0.208051.100
75_Q78_V0.207941.099
48_M51_A0.2041.078
40_Q43_Q0.203891.078
36_D40_Q0.203691.077
20_S23_G0.202871.072
24_G29_D0.201731.066
63_V67_M0.196421.038
37_E40_Q0.193771.024
35_L77_A0.19371.024
67_M75_Q0.193681.024
60_L72_L0.191971.015
86_E90_E0.188940.999
73_S77_A0.187050.989
60_L63_V0.181660.960
44_Q48_M0.180910.956
24_G28_S0.178690.944
20_S40_Q0.177720.939
29_D32_K0.177340.937
41_T66_A0.174910.924
23_G30_V0.174230.921
57_S63_V0.173810.919
45_A70_A0.172770.913
70_A73_S0.166940.882
40_Q44_Q0.165140.873
53_A95_Q0.163480.864
48_M62_E0.161050.851
31_L42_Q0.160990.851
35_L94_M0.160750.850
32_K44_Q0.160090.846
21_S25_A0.159170.841
38_V76_L0.158560.838
29_D40_Q0.157720.834
30_V34_A0.157270.831
52_F61_H0.156570.827
67_M77_A0.156360.826
58_V62_E0.155460.822
40_Q45_A0.155310.821
22_A32_K0.154240.815
78_V81_R0.15390.813
33_N86_E0.151540.801
59_D93_R0.150370.795
77_A89_Q0.150190.794
23_G91_I0.148390.784
30_V76_L0.147890.782
82_N90_E0.146610.775
55_G81_R0.146360.774
70_A74_L0.145560.769
40_Q47_Q0.144470.764
64_M67_M0.143570.759
28_S36_D0.142720.754
80_V84_A0.140810.744
49_A85_V0.140550.743
22_A25_A0.140240.741
27_F30_V0.139620.738
32_K45_A0.139560.738
34_A87_A0.138680.733
85_V88_Y0.138510.732
61_H76_L0.138510.732
38_V42_Q0.138140.730
39_N42_Q0.137440.726
50_Q54_T0.137370.726
74_L82_N0.136530.722
20_S25_A0.135410.716
77_A94_M0.135160.714
48_M58_V0.134540.711
78_V93_R0.133620.706
91_I95_Q0.132520.700
51_A89_Q0.131430.695
35_L40_Q0.129630.685
65_I69_K0.129070.682
29_D44_Q0.128850.681
56_E93_R0.127830.676
26_S40_Q0.126630.669
25_A30_V0.126450.668
67_M85_V0.126310.668
62_E80_V0.126270.667
62_E89_Q0.125550.664
49_A63_V0.125380.663
53_A74_L0.125320.662
22_A47_Q0.125020.661
50_Q61_H0.124630.659
75_Q87_A0.12280.649
26_S31_L0.122380.647
43_Q47_Q0.122190.646
52_F67_M0.12180.644
50_Q80_V0.121680.643
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3zx6A0.98965.80.922
1qu7A0.98965.10.924
4etrA0.73964.50.926
4hyzA0.70834.30.927
3ikmA14.20.927
3g67A0.98963.50.929
3b77A0.38542.80.933
3v47C0.96882.80.933
1qoyA0.52.70.933
4akvA0.98962.60.933
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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