GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
MgtC - MgtC family
Pfam: PF02308 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 134
Sequences: 1526
Seq/Len: 11.39
HH_delta: 0.925 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
4_A35_A0.638123.322
8_G31_S0.609323.172
37_S95_A0.523032.723
11_I93_T0.485292.527
7_L96_I0.451542.351
36_L111_A0.437572.278
30_V90_L0.424052.208
92_L115_V0.417412.173
100_V108_A0.396812.066
28_A118_I0.396672.065
35_A100_V0.368681.919
38_A98_A0.361621.883
7_L112_A0.322761.680
11_I115_V0.307561.601
27_F89_A0.300891.567
27_F93_T0.294611.534
44_F47_S0.290041.510
7_L100_V0.289471.507
5_L28_A0.285451.486
7_L108_A0.269551.403
62_I98_A0.261911.364
4_A8_G0.258161.344
60_A63_V0.251191.308
34_G94_F0.251111.307
10_L116_L0.247621.289
3_L100_V0.246861.285
15_R23_G0.243711.269
7_L109_V0.242761.264
96_I112_A0.23981.248
109_V113_V0.239441.247
83_G86_T0.23181.207
61_G64_S0.230361.199
9_L28_A0.220581.148
9_L24_L0.21541.121
29_L115_V0.213581.112
72_G87_A0.213471.111
104_Y107_L0.213091.109
38_A59_A0.213051.109
27_F86_T0.212841.108
6_L127_R0.212331.105
117_I121_L0.211161.099
60_A64_S0.211071.099
29_L92_L0.207561.081
33_A92_L0.2071.078
65_G68_F0.2061.073
77_Q82_K0.203731.061
13_L17_W0.201171.047
22_A27_F0.198881.035
2_L114_L0.197281.027
67_G91_W0.197041.026
58_V98_A0.196641.024
33_A94_F0.1921.000
42_S47_S0.191830.999
43_E104_Y0.191820.999
17_W99_L0.189460.986
21_P76_K0.187650.977
29_L33_A0.187150.974
115_V119_L0.186930.973
65_G70_G0.186480.971
67_G87_A0.185980.968
59_A102_A0.183620.956
15_R85_T0.18310.953
41_S102_A0.182590.951
27_F119_L0.181040.943
39_L103_G0.178610.930
71_A75_L0.176650.920
106_V110_A0.17570.915
41_S59_A0.175510.914
83_G87_A0.174860.910
67_G70_G0.174770.910
70_G87_A0.174140.907
38_A41_S0.170480.888
23_G85_T0.169580.883
3_L109_V0.167940.874
41_S61_G0.16770.873
40_L102_A0.167240.871
33_A61_G0.16290.848
122_K126_H0.162230.845
31_S44_F0.161270.840
119_L126_H0.160870.838
64_S68_F0.16060.836
72_G86_T0.160560.836
28_A36_L0.160110.834
9_L27_F0.160090.833
24_L32_L0.159790.832
89_A93_T0.159710.832
65_G94_F0.159360.830
20_K121_L0.159240.829
23_G26_T0.158870.827
1_L111_A0.157770.821
28_A122_K0.157480.820
15_R86_T0.157410.820
12_G23_G0.157220.819
31_S100_V0.157130.818
100_V105_Y0.157110.818
42_S104_Y0.156550.815
63_V67_G0.156530.815
5_L79_G0.156440.814
65_G101_G0.156280.814
6_L9_L0.155790.811
84_L94_F0.154390.804
26_T84_L0.154170.803
68_F72_G0.153960.802
118_I125_L0.15340.799
5_L8_G0.153170.797
23_G86_T0.152360.793
33_A91_W0.151740.790
31_S93_T0.151660.790
85_T119_L0.151340.788
43_E107_L0.151020.786
61_G94_F0.150840.785
43_E46_L0.150830.785
16_E23_G0.150750.785
15_R22_A0.150410.783
77_Q80_N0.149870.780
22_A25_R0.148940.775
111_A115_V0.148460.773
65_G72_G0.147350.767
124_P127_R0.146430.762
66_I70_G0.146240.761
31_S35_A0.146090.761
39_L127_R0.145450.757
12_G25_R0.144770.754
32_L107_L0.144770.754
65_G91_W0.144470.752
69_L72_G0.14430.751
61_G67_G0.144290.751
83_G88_A0.143750.748
114_L126_H0.143580.748
58_V104_Y0.14340.747
16_E28_A0.143370.746
61_G66_I0.143320.746
40_L99_L0.143060.745
1_L106_V0.14270.743
40_L104_Y0.142650.743
22_A26_T0.142290.741
64_S87_A0.142080.740
10_L112_A0.141950.739
33_A67_G0.141890.739
27_F61_G0.140490.731
14_E116_L0.14020.730
114_L127_R0.139660.727
5_L32_L0.139050.724
64_S67_G0.138980.724
31_S47_S0.138840.723
59_A63_V0.138760.722
70_G90_L0.13830.720
8_G106_V0.137920.718
36_L95_A0.137850.718
17_W118_I0.137330.715
71_A74_I0.137210.714
13_L46_L0.137190.714
89_A119_L0.136660.711
110_A113_V0.135810.707
38_A62_I0.13570.707
25_R119_L0.135410.705
121_L124_P0.134190.699
65_G69_L0.133770.696
12_G85_T0.133680.696
60_A67_G0.133530.695
22_A90_L0.133530.695
33_A88_A0.13340.695
2_L110_A0.133280.694
21_P71_A0.132590.690
93_T119_L0.132570.690
3_L105_Y0.132490.690
20_K40_L0.131830.686
68_F83_G0.1310.682
67_G88_A0.130560.680
67_G74_I0.129780.676
6_L10_L0.129720.675
22_A85_T0.129720.675
9_L13_L0.129610.675
11_I96_I0.129550.674
110_A117_I0.129060.672
16_E27_F0.129050.672
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3hd6A0.9552110.925
1u7gA0.94788.80.928
4j05A0.97018.70.928
1kvdA0.21647.10.931
4huqT0.634370.931
2nq2A0.91796.60.932
4g1uA0.91044.90.935
2lzrA0.25374.30.937
1vryA0.52994.30.937
2qi9A0.91043.80.939
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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